Detailed information NTG0307892

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AB849_RS04850
• Genome accession: NZ_CP036487
• Coordinates: 930078..931196 (-)
• Length: 372 a.a.
• NCBI ID: WP_037998245.1
• Uniprot ID: A0ABS0QFH5
• Organism: Thermoactinomyces vulgaris strain CDF
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 925078..936196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB849_RS04835 (AB849_004835)	gyrA	925389..927845 (-)	2457	WP_049720749.1	DNA gyrase subunit A	-
AB849_RS04840 (AB849_004840)	gyrB	927872..929785 (-)	1914	WP_037998248.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
AB849_RS04845 (AB849_004845)	remB	929830..930081 (-)	252	WP_062843211.1	extracellular matrix regulator RemB	-
AB849_RS04850 (AB849_004850)	recF	930078..931196 (-)	1119	WP_037998245.1	DNA replication/repair protein RecF	Machinery gene
AB849_RS04855 (AB849_004855)	yaaA	931212..931427 (-)	216	WP_049720748.1	S4 domain-containing protein YaaA	-
AB849_RS04860 (AB849_004860)	dnaN	931469..932602 (-)	1134	WP_049720747.1	DNA polymerase III subunit beta	-
AB849_RS04865 (AB849_004865)	dnaA	932841..934196 (-)	1356	WP_049720746.1	chromosomal replication initiator protein DnaA	-
AB849_RS04870 (AB849_004870)	rpmH	934741..934875 (+)	135	WP_082240799.1	50S ribosomal protein L34	-
AB849_RS04875 (AB849_004875)	rnpA	935003..935356 (+)	354	WP_037998238.1	ribonuclease P protein component	-
AB849_RS04880 (AB849_004880)	yidD	935372..935617 (+)	246	WP_037998237.1	membrane protein insertion efficiency factor YidD	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 42652.27 Da
• Isoelectric Point: 10.0637

>NTDB_id=307892 AB849_RS04850 WP_037998245.1 930078..931196(-) (recF) [Thermoactinomyces vulgaris strain CDF]
MRVQTLELKQYRNIEKLHLHCPEELHFFVGPNAQGKTNILESLYVLALGKSHRTRTHKELIRFGQKASFIKCRVKKGNEI
QRLEISLSDKGKKVSRNGVEQRKLSQYIGSLPAVLFAPEDLALVKGSPQVRRRFLDMEIGQVSPQYVHDLSQLNKLLVQR
NSLLKQLSRQKQEDSPLLEVLDEQFAALSVHLWKKRKQFLKSLTRWAREIHQAITQQPEELVIKYRPSFPLPEPSGPDEW
AEILRSELKKNRQKEVMRGSTAIGPQRDDIRLFLGEMDLHHYGSQGQQRTAALSLKLAEIELIHQEIGYYPILLLDDVLS
ELDDMRKTHLLKAISGRVQTFVTTTGLDGIHPDILSGAKIYQVKQGQITESG

Nucleotide

• Length: 1119 bp

>NTDB_id=307892 AB849_RS04850 WP_037998245.1 930078..931196(-) (recF) [Thermoactinomyces vulgaris strain CDF]
TTGCGTGTCCAAACCCTGGAATTGAAACAGTACCGAAACATTGAGAAACTTCATCTGCATTGTCCGGAGGAGCTTCATTT
CTTTGTCGGCCCCAATGCCCAAGGGAAAACCAACATCCTCGAATCCCTTTATGTCCTTGCGCTTGGCAAATCACACCGCA
CACGGACTCATAAAGAACTGATCCGTTTCGGCCAAAAGGCATCGTTCATCAAGTGCAGAGTAAAAAAAGGAAATGAGATC
CAGCGTCTGGAAATCAGTTTATCGGACAAAGGAAAAAAAGTGAGTCGGAACGGGGTTGAACAAAGGAAGTTGAGTCAGTA
TATCGGCTCGCTTCCTGCCGTCCTCTTTGCGCCGGAGGATCTGGCGCTGGTCAAAGGAAGCCCGCAGGTTCGACGCCGTT
TTTTAGATATGGAGATTGGCCAGGTAAGTCCTCAATATGTGCATGATTTGTCGCAATTAAACAAATTGCTCGTGCAGAGA
AACAGCCTGTTGAAACAACTTTCCCGGCAAAAGCAGGAGGATTCCCCTTTATTGGAGGTATTGGATGAACAATTTGCCGC
TTTGTCCGTCCATTTATGGAAAAAAAGAAAACAGTTTTTAAAATCCCTCACCCGATGGGCGCGTGAAATTCATCAGGCCA
TTACGCAACAGCCGGAGGAGCTGGTAATCAAGTACCGCCCTTCTTTTCCTTTGCCCGAACCATCCGGGCCGGATGAATGG
GCGGAGATTTTGCGGTCGGAACTGAAAAAAAACCGCCAAAAAGAAGTGATGCGGGGAAGTACCGCCATCGGGCCGCAACG
GGATGACATCCGGTTGTTTCTGGGAGAGATGGATCTTCATCATTACGGTTCCCAGGGACAGCAACGAACCGCCGCCTTGT
CGCTCAAGCTGGCGGAAATCGAATTGATTCATCAGGAAATCGGTTATTATCCCATATTATTATTGGATGATGTGTTGTCC
GAATTGGATGACATGCGCAAAACGCATTTATTGAAGGCCATTTCCGGACGTGTCCAAACTTTTGTGACCACCACCGGTTT
GGACGGGATCCATCCGGATATCTTATCCGGAGCCAAAATCTATCAGGTGAAGCAAGGACAGATTACGGAATCGGGGTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-344)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	51.351	99.462	0.511
recF	Streptococcus pneumoniae R6	42.781	100	0.43