Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AB849_RS04505 Genome accession   NZ_CP036487
Coordinates   858059..858655 (-) Length   198 a.a.
NCBI ID   WP_037996544.1    Uniprot ID   A0ABS0QFD5
Organism   Thermoactinomyces vulgaris strain CDF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 853059..863655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS04500 (AB849_004500) - 857473..857748 (-) 276 WP_165489722.1 pro-sigmaK processing inhibitor BofA family protein -
  AB849_RS04505 (AB849_004505) recR 858059..858655 (-) 597 WP_037996544.1 recombination mediator RecR Machinery gene
  AB849_RS04510 (AB849_004510) - 858677..858988 (-) 312 WP_037996542.1 YbaB/EbfC family nucleoid-associated protein -
  AB849_RS04515 (AB849_004515) dnaX 859002..860711 (-) 1710 WP_084712963.1 DNA polymerase III subunit gamma/tau -
  AB849_RS04520 (AB849_004520) - 860850..861992 (-) 1143 WP_049720789.1 two-component system sensor histidine kinase NtrB -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22023.41 Da        Isoelectric Point: 4.6401

>NTDB_id=307889 AB849_RS04505 WP_037996544.1 858059..858655(-) (recR) [Thermoactinomyces vulgaris strain CDF]
MYVPEPISKLIEGFMRLPGIGPKTAQRLAFYVLTMEEEDVLDLAKALVRVQRDLCHCSVCGYITDQDPCYICSDKNRDQS
TICVVQDTKDLIAMERTREYNGLYHVLNGAISPIEGIGPDDLNIPGLLKRLEDEKVKELILATNPNIEGEATAMYLSRLT
KPFGLKVTRIAHGLPVGGDLEYADEVTLAKALEGRQEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=307889 AB849_RS04505 WP_037996544.1 858059..858655(-) (recR) [Thermoactinomyces vulgaris strain CDF]
TTGTATGTGCCTGAACCAATCTCAAAACTGATCGAGGGATTCATGCGCTTGCCGGGGATTGGCCCCAAAACGGCTCAACG
GCTGGCTTTTTATGTATTGACCATGGAAGAAGAGGACGTTTTGGATTTGGCCAAAGCATTGGTCCGGGTACAACGGGATT
TGTGCCATTGTTCCGTATGCGGGTATATCACGGATCAGGACCCTTGTTATATCTGTTCCGATAAAAACCGGGACCAGTCC
ACCATTTGTGTGGTGCAGGACACCAAAGATTTGATCGCCATGGAACGGACTCGTGAATATAATGGCTTGTATCATGTGTT
GAACGGGGCGATTTCACCCATTGAAGGAATCGGCCCTGATGATTTGAATATTCCCGGACTGTTGAAGCGGTTGGAAGACG
AAAAAGTCAAGGAGCTGATCCTGGCGACCAATCCCAACATTGAAGGGGAAGCGACGGCAATGTATTTGTCCCGTTTGACC
AAACCTTTCGGGTTGAAGGTGACGCGCATCGCCCACGGACTGCCGGTCGGCGGGGATTTGGAATATGCGGATGAAGTCAC
CCTGGCCAAAGCGCTGGAAGGCAGACAAGAGTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

74.747

100

0.747
  recR Streptococcus pneumoniae R6

58.081

100

0.581
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.571

98.99

0.53

Multiple sequence alignment