Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB849_RS04430 Genome accession   NZ_CP036487
Coordinates   844136..844408 (+) Length   90 a.a.
NCBI ID   WP_037997937.1    Uniprot ID   A0A8I1A9S7
Organism   Thermoactinomyces vulgaris strain CDF     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 839136..849408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS04420 (AB849_004420) - 840948..842804 (-) 1857 WP_049720798.1 ATP-binding protein -
  AB849_RS04425 (AB849_004425) - 842832..843785 (-) 954 WP_037997939.1 DNA double-strand break repair nuclease NurA -
  AB849_RS04430 (AB849_004430) abrB 844136..844408 (+) 273 WP_037997937.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB849_RS04435 (AB849_004435) ptsG 844675..846162 (-) 1488 WP_276319278.1 glucose-specific PTS transporter subunit IIBC -
  AB849_RS04440 (AB849_004440) rsmI 846280..847173 (-) 894 WP_037997935.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AB849_RS04445 (AB849_004445) - 847145..847432 (-) 288 WP_049720829.1 GIY-YIG nuclease family protein -
  AB849_RS04450 (AB849_004450) - 847473..847838 (-) 366 WP_037997932.1 initiation-control protein YabA -
  AB849_RS04455 (AB849_004455) yaaT 847886..848716 (-) 831 WP_037997929.1 PSP1 domain-containing protein Regulator

Sequence

Protein


Download         Length: 90 a.a.        Molecular weight: 10334.11 Da        Isoelectric Point: 6.9525

>NTDB_id=307887 AB849_RS04430 WP_037997937.1 844136..844408(+) (abrB) [Thermoactinomyces vulgaris strain CDF]
MLKSTGIVRKVDELGRVVIPIELRRTLGIGEKDALEIYVDGERIVLKKYEPACIFSGEVEDTVRYKNKVVSKKCIEEMYQ
MIHGEKVYAD

Nucleotide


Download         Length: 273 bp        

>NTDB_id=307887 AB849_RS04430 WP_037997937.1 844136..844408(+) (abrB) [Thermoactinomyces vulgaris strain CDF]
ATGTTAAAATCTACGGGCATTGTACGTAAGGTAGACGAACTTGGCCGTGTTGTTATACCTATCGAATTACGTCGAACACT
GGGAATTGGCGAAAAAGACGCCCTGGAAATTTATGTTGACGGTGAACGGATTGTTCTGAAAAAATATGAACCCGCTTGCA
TTTTCAGTGGCGAAGTGGAAGACACCGTTCGCTATAAAAATAAAGTTGTCAGCAAAAAATGTATCGAAGAGATGTATCAA
ATGATCCATGGTGAAAAAGTCTACGCAGACTAA

Domains

Predicted by InterProScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8I1A9S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

77.778

70

0.544

Multiple sequence alignment