Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   AB849_RS00010 Genome accession   NZ_CP036487
Coordinates   585..1877 (-) Length   430 a.a.
NCBI ID   WP_131470830.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain CDF     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..6877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS00010 (AB849_000010) clpX 585..1877 (-) 1293 WP_131470830.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  AB849_RS00015 (AB849_000015) clpP 1895..2479 (-) 585 WP_037993559.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AB849_RS00020 (AB849_000020) tig 2559..3857 (-) 1299 WP_037993561.1 trigger factor -
  AB849_RS00025 (AB849_000025) - 4278..5210 (-) 933 WP_049719892.1 NAD(P)H-dependent flavin oxidoreductase -
  AB849_RS00030 (AB849_000030) - 5263..5595 (-) 333 WP_231564560.1 hypothetical protein -

Sequence

Protein


Download         Length: 430 a.a.        Molecular weight: 47894.37 Da        Isoelectric Point: 4.7514

>NTDB_id=307866 AB849_RS00010 WP_131470830.1 585..1877(-) (clpX) [Thermoactinomyces vulgaris strain CDF]
MFKFNEEKGQLKCSFCGKSQDQVRKLVAGPGVYICDECIELCNEIVEEELGNEEEIDLQNLPKPQEICSILEEYVIGQEE
AKKALSVAVYNHYKRINSSQKSDDVELQKSNIMMVGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDIEKAERGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTSNI
LFICGGAFDGLETIIKRRIGKKVIGFGMDQQNVNMKPGEYLKLVLPEDLLKFGLIPEFVGRLPVISTLEPLDEQALVRIL
LEPKNALVKQYKKLLEMDNVELSFEQDALEAIAKEAIKRKTGARGLRAIIESIMLDVMFELPSRDDIVKCVITKDTVVQG
GSPKLYTREGRVITTKKKNLLEEQWDLGIC

Nucleotide


Download         Length: 1293 bp        

>NTDB_id=307866 AB849_RS00010 WP_131470830.1 585..1877(-) (clpX) [Thermoactinomyces vulgaris strain CDF]
ATGTTCAAGTTCAATGAAGAAAAAGGACAATTGAAATGTTCTTTCTGTGGAAAATCCCAGGATCAGGTGCGCAAGCTGGT
CGCCGGACCTGGTGTATATATCTGTGACGAATGCATTGAATTGTGCAATGAAATCGTGGAAGAAGAATTGGGCAATGAAG
AAGAAATTGATTTGCAAAACTTGCCCAAACCACAGGAGATCTGCTCCATTCTGGAGGAATACGTCATTGGTCAGGAAGAA
GCGAAGAAAGCATTGTCCGTTGCGGTTTACAACCACTACAAACGGATCAATTCTTCGCAGAAATCCGATGATGTTGAACT
GCAAAAAAGCAACATCATGATGGTGGGGCCGACGGGGAGCGGGAAAACCCTCCTTGCCCAAACATTGGCCCGCATCCTGA
ATGTCCCGTTTGCGATTGCGGACGCGACGTCGCTGACGGAAGCGGGTTATGTCGGGGAAGACGTGGAAAACATCCTGCTC
AAATTGATCCAAGCGGCGGATTACGATATTGAAAAAGCGGAACGCGGAATCATCTACATTGATGAAATCGACAAAGTTGC
CCGCAAATCTGAAAATCCGTCGATCACCCGTGACGTGTCCGGTGAGGGTGTCCAACAGGCGTTGCTGAAGATTTTGGAAG
GAACCGTTGCCAGTGTGCCACCGCAAGGAGGGCGCAAACACCCGCATCAGGAGTTCATCCAAATTGACACCAGCAACATC
TTGTTTATATGCGGGGGCGCTTTTGACGGATTGGAAACGATCATTAAACGGCGGATCGGCAAGAAAGTGATCGGTTTTGG
AATGGATCAGCAAAACGTCAACATGAAACCGGGCGAATATCTGAAGCTGGTGTTGCCTGAAGACCTCTTGAAGTTTGGTC
TCATTCCGGAATTTGTGGGAAGGCTTCCGGTCATTTCTACATTGGAACCGCTCGATGAGCAAGCGCTAGTGCGCATCTTG
CTCGAGCCCAAAAATGCACTGGTGAAACAGTACAAAAAACTGTTGGAAATGGACAATGTCGAATTGTCCTTTGAACAAGA
CGCGCTGGAGGCCATTGCCAAAGAGGCCATCAAGCGCAAAACGGGTGCCCGGGGACTCAGGGCGATCATCGAGTCCATCA
TGTTGGATGTCATGTTTGAATTGCCTTCGCGCGATGATATCGTCAAATGTGTCATCACCAAGGACACGGTGGTGCAAGGA
GGAAGCCCGAAACTCTATACCCGTGAAGGGCGCGTCATTACGACAAAAAAGAAGAATCTGCTTGAGGAACAATGGGATTT
GGGCATCTGCTGA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(108-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

67.168

92.791

0.623
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.317

95.349

0.547