Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   DNI27_RS09515 Genome accession   NZ_CP031603
Coordinates   2066608..2067651 (+) Length   347 a.a.
NCBI ID   WP_014613481.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain AK9     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2061608..2072651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNI27_RS09490 (DNI27_09640) - 2061863..2062585 (+) 723 WP_110165042.1 type 1 glutamine amidotransferase -
  DNI27_RS09495 (DNI27_09645) - 2063554..2064552 (-) 999 WP_014613477.1 aromatic acid exporter family protein -
  DNI27_RS09500 (DNI27_09650) map 2064649..2065410 (+) 762 WP_014613478.1 type I methionyl aminopeptidase -
  DNI27_RS09505 (DNI27_09655) - 2065508..2065897 (+) 390 WP_014613479.1 hypothetical protein -
  DNI27_RS09510 (DNI27_09660) liaF 2065910..2066611 (+) 702 WP_014613480.1 cell wall-active antibiotics response protein LiaF -
  DNI27_RS09515 (DNI27_09665) vraS 2066608..2067651 (+) 1044 WP_014613481.1 sensor histidine kinase Regulator
  DNI27_RS09520 (DNI27_09670) vraR 2067641..2068270 (+) 630 WP_014613482.1 response regulator transcription factor Regulator
  DNI27_RS09525 (DNI27_09675) - 2068836..2069417 (-) 582 WP_015729388.1 carbonic anhydrase -
  DNI27_RS09530 (DNI27_09680) - 2069450..2070787 (-) 1338 WP_037542645.1 YihY/virulence factor BrkB family protein -
  DNI27_RS09535 (DNI27_09685) - 2071003..2071290 (-) 288 WP_014613485.1 YtxH domain-containing protein -
  DNI27_RS09540 (DNI27_09690) - 2071298..2071756 (-) 459 WP_014613486.1 low molecular weight protein-tyrosine-phosphatase -
  DNI27_RS09545 (DNI27_09695) - 2071890..2072093 (+) 204 WP_037542646.1 DUF1128 family protein -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39939.24 Da        Isoelectric Point: 5.0435

>NTDB_id=307795 DNI27_RS09515 WP_014613481.1 2066608..2067651(+) (vraS) [Staphylococcus pseudintermedius strain AK9]
MNHYVRAIGSMLILVYSMLTAFFFIDKVFTNIIFFQGMFYTQILGIPVFIFLNLVVIFLCIIVGSVLAYKINQQNDWLKQ
QIVRAFEGETVGINDQQLELYNETIELYQALVPLNQELHKMRIKTQNLTNETYNLNDLKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETDLAPPLDQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKSLVTDLQRKVPIKVVQEI
DEFEVPKGIEDHLFRITQEAISNTLRHAEGTQVTVELLNRNDYLLLRIQDDGIGFNVDEKLEQSYGLKNMRERAIEIGAT
FHIVSLPDAGTRIEVKAPLEKEEQHDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=307795 DNI27_RS09515 WP_014613481.1 2066608..2067651(+) (vraS) [Staphylococcus pseudintermedius strain AK9]
ATGAATCACTACGTCCGAGCGATAGGTTCGATGCTCATTCTCGTATATAGTATGCTCACCGCGTTTTTCTTTATTGACAA
AGTGTTCACCAATATTATTTTCTTTCAAGGCATGTTTTATACACAAATTTTAGGTATTCCTGTTTTTATCTTTTTAAATT
TAGTCGTCATTTTTTTATGTATTATTGTGGGCAGTGTGTTAGCTTATAAAATCAATCAACAAAATGATTGGCTCAAGCAA
CAAATCGTTCGTGCCTTTGAAGGTGAAACAGTGGGCATCAATGATCAACAACTCGAGCTGTATAATGAAACGATTGAATT
ATATCAAGCACTCGTCCCATTAAATCAAGAATTGCATAAAATGCGAATTAAAACACAAAATTTAACGAATGAAACGTATA
ATTTAAATGATTTGAAGGTGAAAAAGATTATAGAAGATGAACGACAGCGTTTAGCACGAGAATTGCATGATAGTGTGTCG
CAACAACTTTTCGCGGCAAGTATGATGTTGTCTGCAATCAAAGAAACAGATTTAGCACCACCGTTAGACCAACAAATTCC
AACGTTAGAAAAAATGGTGCAAGACTCACAACTTGAAATGCGCGCTCTGTTACTTCACTTGAGACCTATAGGATTGAAGG
ACAAATCGTTAGGTGAGGGAATTAAATCGCTTGTGACGGATCTACAACGTAAAGTACCCATTAAAGTCGTGCAAGAAATT
GATGAGTTTGAAGTACCTAAAGGCATTGAGGATCACCTTTTTAGAATTACCCAAGAAGCGATTTCCAATACGTTACGACA
TGCTGAGGGGACGCAAGTAACGGTAGAATTACTTAACCGCAATGATTATTTATTGTTGCGTATACAAGATGACGGCATTG
GATTTAATGTCGATGAAAAGTTAGAACAAAGTTATGGATTAAAAAATATGCGTGAACGTGCAATAGAGATTGGTGCCACA
TTTCATATCGTCTCATTACCTGATGCGGGGACGAGAATAGAAGTGAAAGCACCACTTGAAAAGGAGGAACAGCATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

83.862

100

0.839


Multiple sequence alignment