Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DY328_RS05320 | Genome accession | NZ_CP031556 |
| Coordinates | 993602..993997 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain Sag27 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 988602..998997
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DY328_RS05285 (DY328_05285) | proC | 988996..989766 (-) | 771 | WP_001865901.1 | pyrroline-5-carboxylate reductase | - |
| DY328_RS05290 (DY328_05290) | pepA | 989836..990903 (-) | 1068 | WP_001281323.1 | glutamyl aminopeptidase | - |
| DY328_RS05295 (DY328_05295) | - | 991088..991327 (-) | 240 | WP_000660180.1 | hypothetical protein | - |
| DY328_RS05300 (DY328_05300) | - | 991488..991772 (+) | 285 | WP_000791272.1 | DUF4651 domain-containing protein | - |
| DY328_RS05305 (DY328_05305) | - | 991769..992092 (+) | 324 | WP_000602781.1 | thioredoxin family protein | - |
| DY328_RS05310 (DY328_05310) | ytpR | 992125..992751 (+) | 627 | WP_000578327.1 | YtpR family tRNA-binding protein | - |
| DY328_RS05315 (DY328_05315) | - | 992805..993521 (-) | 717 | WP_000186185.1 | class I SAM-dependent methyltransferase | - |
| DY328_RS05320 (DY328_05320) | ssbA | 993602..993997 (+) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| DY328_RS05325 (DY328_05325) | - | 994121..994765 (+) | 645 | WP_000416612.1 | HAD family hydrolase | - |
| DY328_RS05330 (DY328_05330) | - | 994792..996537 (+) | 1746 | WP_000930334.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| DY328_RS05335 (DY328_05335) | - | 996518..997258 (+) | 741 | WP_000697630.1 | LytTR family transcriptional regulator DNA-binding domain-containing protein | - |
| DY328_RS05340 (DY328_05340) | - | 997428..997883 (+) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| DY328_RS05345 (DY328_05345) | lrgB | 997885..998613 (+) | 729 | WP_000421724.1 | antiholin-like protein LrgB | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=307587 DY328_RS05320 WP_000282447.1 993602..993997(+) (ssbA) [Streptococcus agalactiae strain Sag27]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=307587 DY328_RS05320 WP_000282447.1 993602..993997(+) (ssbA) [Streptococcus agalactiae strain Sag27]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |