Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ACICU_RS16975 Genome accession   NC_010611
Coordinates   3599082..3599822 (-) Length   246 a.a.
NCBI ID   WP_000076098.1    Uniprot ID   A0A7U3Y2X6
Organism   Acinetobacter baumannii ACICU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3594082..3604822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICU_RS16955 (ACICU_03388) aroB 3594624..3595706 (-) 1083 WP_001193991.1 3-dehydroquinate synthase -
  ACICU_RS16960 (ACICU_03389) aroK 3595735..3596304 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ACICU_RS16965 (ACICU_03390) pilQ 3596316..3598481 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ACICU_RS16970 (ACICU_03391) pilP 3598544..3599071 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ACICU_RS16975 (ACICU_03392) pilO 3599082..3599822 (-) 741 WP_000076098.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACICU_RS16980 (ACICU_03393) pilN 3599819..3600460 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ACICU_RS16985 (ACICU_03394) pilM 3600460..3601518 (-) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  ACICU_RS16990 (ACICU_03395) ponA 3601678..3604233 (+) 2556 WP_000736667.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27813.61 Da        Isoelectric Point: 4.8357

>NTDB_id=30748 ACICU_RS16975 WP_000076098.1 3599082..3599822(-) (pilO) [Acinetobacter baumannii ACICU]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLIGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=30748 ACICU_RS16975 WP_000076098.1 3599082..3599822(-) (pilO) [Acinetobacter baumannii ACICU]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
TAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2X6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

68.724

98.78

0.679

Multiple sequence alignment