Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   DV947_RS08700 Genome accession   NZ_CP031545
Coordinates   1647913..1648869 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain ST109     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1642913..1653869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV947_RS08670 (DV947_08675) proC 1643465..1644235 (+) 771 WP_116920364.1 pyrroline-5-carboxylate reductase -
  DV947_RS08675 (DV947_08680) - 1644265..1644927 (-) 663 WP_023909970.1 type II CAAX endopeptidase family protein -
  DV947_RS08680 (DV947_08685) - 1645024..1645476 (-) 453 WP_116920365.1 CAAX protease -
  DV947_RS10380 (DV947_08690) - 1645550..1645975 (-) 426 WP_116920366.1 CPBP family intramembrane glutamic endopeptidase -
  DV947_RS08690 (DV947_08695) - 1646218..1646415 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  DV947_RS08695 (DV947_08700) - 1646664..1647857 (-) 1194 WP_014608740.1 acetate kinase -
  DV947_RS08700 (DV947_08705) comYH 1647913..1648869 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  DV947_RS08705 (DV947_08710) comGG 1648914..1649231 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  DV947_RS08710 (DV947_08715) comYF 1649209..1649646 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  DV947_RS08715 (DV947_08720) comGE 1649630..1649923 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  DV947_RS08720 (DV947_08725) comYD 1649895..1650323 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  DV947_RS08725 (DV947_08730) comYC 1650283..1650609 (-) 327 WP_014727724.1 competence type IV pilus major pilin ComGC Machinery gene
  DV947_RS08730 (DV947_08735) comYB 1650606..1651706 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  DV947_RS08735 (DV947_08740) comGA/cglA/cilD 1651588..1652529 (-) 942 WP_014727726.1 competence type IV pilus ATPase ComGA Machinery gene
  DV947_RS08740 (DV947_08745) - 1652610..1652972 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=307438 DV947_RS08700 WP_011226622.1 1647913..1648869(-) (comYH) [Streptococcus thermophilus strain ST109]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=307438 DV947_RS08700 WP_011226622.1 1647913..1648869(-) (comYH) [Streptococcus thermophilus strain ST109]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment