Detailed information NTG0307440

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: DV947_RS08720
• Genome accession: NZ_CP031545
• Coordinates: 1649895..1650323 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain ST109
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1644895..1655323

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DV947_RS08680 (DV947_08685)	-	1645024..1645476 (-)	453	WP_116920365.1	CAAX protease	-
DV947_RS10380 (DV947_08690)	-	1645550..1645975 (-)	426	WP_116920366.1	CPBP family intramembrane glutamic endopeptidase	-
DV947_RS08690 (DV947_08695)	-	1646218..1646415 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
DV947_RS08695 (DV947_08700)	-	1646664..1647857 (-)	1194	WP_014608740.1	acetate kinase	-
DV947_RS08700 (DV947_08705)	comYH	1647913..1648869 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
DV947_RS08705 (DV947_08710)	comGG	1648914..1649231 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
DV947_RS08710 (DV947_08715)	comYF	1649209..1649646 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
DV947_RS08715 (DV947_08720)	comGE	1649630..1649923 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
DV947_RS08720 (DV947_08725)	comYD	1649895..1650323 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
DV947_RS08725 (DV947_08730)	comYC	1650283..1650609 (-)	327	WP_014727724.1	competence type IV pilus major pilin ComGC	Machinery gene
DV947_RS08730 (DV947_08735)	comYB	1650606..1651706 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
DV947_RS08735 (DV947_08740)	comGA/cglA/cilD	1651588..1652529 (-)	942	WP_014727726.1	competence type IV pilus ATPase ComGA	Machinery gene
DV947_RS08740 (DV947_08745)	-	1652610..1652972 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=307440 DV947_RS08720 WP_011226626.1 1649895..1650323(-) (comYD) [Streptococcus thermophilus strain ST109]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=307440 DV947_RS08720 WP_011226626.1 1649895..1650323(-) (comYD) [Streptococcus thermophilus strain ST109]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTCAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38