Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EYC20_RS05940 Genome accession   NZ_CP036388
Coordinates   1240743..1242089 (-) Length   448 a.a.
NCBI ID   WP_001085755.1    Uniprot ID   -
Organism   Helicobacter pylori strain 81C9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1235743..1247089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC20_RS05925 - 1237969..1238802 (+) 834 WP_000393036.1 sulfite exporter TauE/SafE family protein -
  EYC20_RS05930 - 1239194..1239412 (-) 219 WP_080020184.1 DUF3519 domain-containing protein -
  EYC20_RS05935 msrB 1239542..1240621 (-) 1080 WP_000866642.1 peptide-methionine (R)-S-oxide reductase MsrB -
  EYC20_RS05940 radA 1240743..1242089 (-) 1347 WP_001085755.1 DNA repair protein RadA Machinery gene
  EYC20_RS05945 - 1242200..1242433 (-) 234 WP_000450355.1 ribbon-helix-helix domain-containing protein -
  EYC20_RS05950 - 1242587..1243567 (-) 981 WP_001051940.1 iron-sulfur cluster assembly scaffold protein NifU -
  EYC20_RS05955 - 1243589..1244752 (-) 1164 WP_000941661.1 NifS family cysteine desulfurase -
  EYC20_RS05960 - 1244924..1245385 (-) 462 WP_024116055.1 helix-turn-helix domain-containing protein -
  EYC20_RS05965 - 1245524..1246075 (+) 552 WP_000846497.1 YbhB/YbcL family Raf kinase inhibitor-like protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49514.42 Da        Isoelectric Point: 8.0235

>NTDB_id=307440 EYC20_RS05940 WP_001085755.1 1240743..1242089(-) (radA) [Helicobacter pylori strain 81C9]
MAKKTSLFECQHCGFTSPKWLGKCTQCNSWESFIELNQTQKEVLNTLKNPLPKAQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGIAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
IESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRNIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANAVGKIVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=307440 EYC20_RS05940 WP_001085755.1 1240743..1242089(-) (radA) [Helicobacter pylori strain 81C9]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAGTGGCTGGGCAAGTGCACTCAATG
CAACTCATGGGAGAGTTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTAAACACGCTTAAAAATCCGCTCCCAAAAG
CGCAAAAAAGCGTTTCTATCGCTGAAATTGAGCATGAAGAAGTGATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTGGGTGGGGGGATCGCTAAAGGGGGGTTATATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGCGCCACTAGATTGGACTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATTGAAAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCACCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAAATATTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATTGCAGGGCCTAGAGTGTTAGAGCATATGGTAGATAGCGTGCTGTATTTTGAAGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAAGCTTCAAGCCTGTTTTTTTCCAAAGAAGAGCCTATGGAAGGGAGTGCCA
TTACCATCACTTTAGAAGGCTCAAGAGCGTTGATTTTAGAAATCCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGATTAGCGAACGGGTTTGACACCAACCGCCTTAACATGCTCATCGCTTTATTAGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGGATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGCGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCCAATTTGAACGCTAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCTAAAAAACC
CAGCCAAAAAACCTCGATCAAATGCTATGAAGCCAATGCGGTGGGTAAGATTGTTGAATGGATGTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(62-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

47.183

95.089

0.449
  radA Streptococcus mitis SK321

47.183

95.089

0.449
  radA Streptococcus pneumoniae Rx1

47.183

95.089

0.449
  radA Streptococcus pneumoniae R6

47.183

95.089

0.449
  radA Streptococcus pneumoniae TIGR4

47.183

95.089

0.449
  radA Streptococcus mitis NCTC 12261

46.948

95.089

0.446
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.604

95.313

0.444

Multiple sequence alignment