Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DV947_RS05340 Genome accession   NZ_CP031545
Coordinates   997160..997972 (-) Length   270 a.a.
NCBI ID   WP_116920393.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST109     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 992160..1002972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV947_RS05315 (DV947_05320) - 993097..993483 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  DV947_RS05320 (DV947_05325) - 993541..994454 (-) 914 Protein_970 GNAT family N-acetyltransferase -
  DV947_RS05325 (DV947_05330) yidA 994662..995471 (+) 810 WP_011226081.1 sugar-phosphatase -
  DV947_RS05330 (DV947_05335) - 995473..996687 (+) 1215 WP_002953123.1 aminoacyltransferase -
  DV947_RS05335 (DV947_05340) - 996739..997100 (-) 362 Protein_973 YbaN family protein -
  DV947_RS05340 (DV947_05345) vicX 997160..997972 (-) 813 WP_116920393.1 MBL fold metallo-hydrolase Regulator
  DV947_RS05345 (DV947_05350) vicK 997978..999318 (-) 1341 WP_084828862.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DV947_RS05350 (DV947_05355) vicR 999311..1000018 (-) 708 WP_011681206.1 response regulator YycF Regulator
  DV947_RS05355 (DV947_05360) - 1000545..1001312 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  DV947_RS05360 (DV947_05365) - 1001324..1002157 (+) 834 WP_116920255.1 transporter substrate-binding domain-containing protein -
  DV947_RS05365 (DV947_05370) - 1002175..1002873 (+) 699 WP_014608374.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30073.02 Da        Isoelectric Point: 5.5779

>NTDB_id=307416 DV947_RS05340 WP_116920393.1 997160..997972(-) (vicX) [Streptococcus thermophilus strain ST109]
MTSELGFRYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=307416 DV947_RS05340 WP_116920393.1 997160..997972(-) (vicX) [Streptococcus thermophilus strain ST109]
ATGACCTCAGAATTAGGGTTTAGATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCTGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.358

99.259

0.778

Multiple sequence alignment