Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   DXT74_RS13675 Genome accession   NZ_CP031514
Coordinates   2953913..2954704 (+) Length   263 a.a.
NCBI ID   WP_043631366.1    Uniprot ID   A0A1W0D3T9
Organism   Chromobacterium sp. Rain0013     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2948913..2959704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXT74_RS13645 (DXT74_13540) - 2949085..2949675 (+) 591 WP_194426222.1 HupE/UreJ family protein -
  DXT74_RS13650 (DXT74_13545) - 2949775..2950296 (-) 522 WP_194426223.1 ATP-binding protein -
  DXT74_RS13655 (DXT74_13550) - 2950519..2951208 (+) 690 WP_194426224.1 SOS response-associated peptidase -
  DXT74_RS13660 (DXT74_13555) - 2951265..2952012 (+) 748 Protein_2661 IS5 family transposase -
  DXT74_RS13665 (DXT74_13560) pgeF 2952066..2952821 (-) 756 WP_194426225.1 peptidoglycan editing factor PgeF -
  DXT74_RS13670 (DXT74_13565) rluD 2952811..2953914 (-) 1104 WP_194426226.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DXT74_RS13675 (DXT74_13570) comL 2953913..2954704 (+) 792 WP_043631366.1 outer membrane protein assembly factor BamD Machinery gene
  DXT74_RS13680 (DXT74_13575) - 2954847..2956361 (+) 1515 WP_194426227.1 hypothetical protein -
  DXT74_RS13685 (DXT74_13580) - 2956421..2956759 (-) 339 WP_019100167.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30389.47 Da        Isoelectric Point: 6.9811

>NTDB_id=307254 DXT74_RS13675 WP_043631366.1 2953913..2954704(+) (comL) [Chromobacterium sp. Rain0013]
MKRYVVAAMLVMGLAGCATTETYDETRGWTVEKLYSEAHDELNSGNYTRAVKLYETLEARFPYGRYAQQAQMDLAYTHYK
DNEPEQAIASADRFIKLHPTHPNLDYLYYLKGLVFYNDDSGLLAKWAGQDMSERDPRAAREAFTAFRELVTRFPNSIYKE
DASKKMERLLDALGGNEMHVARYYMKRGAYLAAANRAQGVVKNYANTKYPEEALGIMVAAYDKLSMPQLRDDAKRVLALN
YPNSEYLKEGWSIEDMPWWKLWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=307254 DXT74_RS13675 WP_043631366.1 2953913..2954704(+) (comL) [Chromobacterium sp. Rain0013]
ATGAAAAGATACGTTGTCGCTGCAATGTTGGTGATGGGGCTTGCCGGTTGTGCAACCACGGAAACCTACGATGAGACTCG
CGGCTGGACCGTGGAAAAGCTGTATTCGGAAGCGCATGATGAGTTGAACAGCGGCAATTATACCCGCGCTGTCAAGCTCT
ACGAAACGCTGGAAGCGCGTTTCCCTTACGGGCGTTACGCTCAGCAGGCGCAGATGGACCTGGCTTATACCCATTACAAG
GATAACGAGCCGGAGCAGGCCATCGCCTCCGCCGACCGTTTCATCAAGCTTCATCCCACCCATCCAAACCTGGACTACCT
CTATTATCTGAAAGGCTTGGTGTTTTACAACGATGATTCCGGCTTGCTGGCCAAATGGGCCGGCCAGGACATGAGCGAGC
GCGATCCGCGCGCCGCGCGCGAGGCCTTCACCGCCTTCCGCGAACTGGTGACGCGCTTCCCCAACAGCATTTACAAGGAA
GACGCCTCCAAGAAGATGGAGCGGCTGCTGGATGCGCTGGGCGGCAACGAGATGCACGTAGCCCGCTATTACATGAAGCG
CGGCGCTTACCTGGCCGCCGCCAACCGCGCCCAGGGCGTGGTGAAGAACTACGCCAACACCAAGTACCCGGAAGAGGCGC
TGGGCATCATGGTGGCGGCTTACGACAAGCTGTCCATGCCGCAACTGCGCGACGACGCCAAGCGCGTGCTGGCGCTGAAC
TACCCCAACAGCGAATACCTGAAAGAGGGCTGGTCCATTGAGGACATGCCGTGGTGGAAACTGTGGAAGTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W0D3T9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

57.895

100

0.586
  comL Neisseria gonorrhoeae MS11

56.767

100

0.574

Multiple sequence alignment