Detailed information NTG0030722

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SDEG_RS10510
• Genome accession: NC_012891
• Coordinates: 2091052..2092158 (+)
• Length: 368 a.a.
• NCBI ID: WP_012767687.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. equisimilis GGS_124
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2086052..2097158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDEG_RS10485 (SDEG_2159)	pgsA	2086162..2086704 (-)	543	WP_012767683.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SDEG_RS10490 (SDEG_2160)	-	2086718..2087749 (-)	1032	WP_003061371.1	helix-turn-helix domain-containing protein	-
SDEG_RS10495 (SDEG_2161)	-	2087799..2089082 (-)	1284	WP_012767684.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SDEG_RS10500 (SDEG_2162)	-	2089084..2090328 (-)	1245	WP_012767685.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SDEG_RS10505 (SDEG_2163)	yaaA	2090637..2091050 (+)	414	WP_003055132.1	S4 domain-containing protein YaaA	-
SDEG_RS10510 (SDEG_2164)	recF	2091052..2092158 (+)	1107	WP_012767687.1	DNA replication/repair protein RecF	Machinery gene
SDEG_RS10515 (SDEG_2165)	-	2092215..2093078 (-)	864	WP_003055126.1	GRP family sugar transporter	-
SDEG_RS10520 (SDEG_2166)	guaB	2093290..2094771 (-)	1482	WP_012767688.1	IMP dehydrogenase	-
SDEG_RS10525 (SDEG_2167)	trpS	2094988..2096010 (-)	1023	WP_003055141.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 41936.84 Da
• Isoelectric Point: 7.8084

>NTDB_id=30722 SDEG_RS10510 WP_012767687.1 2091052..2092158(+) (recF) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MWIKELELKYYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRVSGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGTRVMEHRIDFINALEKEANTHHQAISNGLENLSLSYQSSVVFDKRTNIYQQFLH
QLEKNHQKDFFRKNTSVGPHRDDLAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTIQVDSEIH

Nucleotide

• Length: 1107 bp

>NTDB_id=30722 SDEG_RS10510 WP_012767687.1 2091052..2092158(+) (recF) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGTGGATTAAAGAGTTAGAGTTAAAATATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCATCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTGTTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGCGTGACAAAGATTAATGCGCTAAAACAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGGGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAACCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAGCAAATTGATGCGGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAAC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCATTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAATCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAGAACTAATATTTACCAACAATTTTTACAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGTGTGGGCCCACATCGCGATGACTTAGCCTTTTA
CATTAACGGAATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATTCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCTATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCATTCAAGTTGATTCTGAAATTCACTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-361)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	63.187	98.913	0.625
recF	Bacillus subtilis subsp. subtilis str. 168	45.455	100	0.462