Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DXX82_RS06085 Genome accession   NZ_CP031477
Coordinates   1247133..1247495 (+) Length   120 a.a.
NCBI ID   WP_115912017.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242133..1252495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS06055 glmU 1242563..1243933 (+) 1371 WP_049371771.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  DXX82_RS06060 lspA 1244050..1244541 (+) 492 WP_070852916.1 signal peptidase II -
  DXX82_RS06065 ispH 1244538..1245482 (+) 945 WP_115912013.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DXX82_RS06070 - 1245529..1245900 (-) 372 WP_049371768.1 DUF305 domain-containing protein -
  DXX82_RS06075 rdgB 1246032..1246631 (+) 600 WP_115912015.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  DXX82_RS06080 - 1246670..1246987 (+) 318 WP_005695251.1 heavy metal-binding domain-containing protein -
  DXX82_RS06085 comE1/comEA 1247133..1247495 (+) 363 WP_115912017.1 helix-hairpin-helix domain-containing protein Machinery gene
  DXX82_RS06090 focA 1247708..1248562 (+) 855 WP_049371763.1 formate transporter FocA -
  DXX82_RS06095 pflB 1248618..1250930 (+) 2313 WP_162860491.1 formate C-acetyltransferase -
  DXX82_RS06100 pflA 1251060..1251800 (+) 741 WP_049364777.1 pyruvate formate lyase 1-activating protein -
  DXX82_RS06105 - 1251854..1252357 (+) 504 WP_049364008.1 surface-adhesin E family protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13076.96 Da        Isoelectric Point: 9.6909

>NTDB_id=307135 DXX82_RS06085 WP_115912017.1 1247133..1247495(+) (comE1/comEA) [Haemophilus parainfluenzae strain M27794]
MKLMKQLFSSLFIAGAMLSTQALAEEKTSEQAQPQMQVQQQTAAQAPSQTVQQTVSDKLNINTASASDIQKALIGIGAKK
AEAIVQYREKHGNFTAAEQLLEVQGIGKATLEKNRDRIVF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=307135 DXX82_RS06085 WP_115912017.1 1247133..1247495(+) (comE1/comEA) [Haemophilus parainfluenzae strain M27794]
ATGAAATTGATGAAACAGTTATTTAGTTCATTGTTTATTGCAGGCGCGATGTTGAGTACACAAGCGCTTGCTGAAGAAAA
GACATCTGAGCAGGCTCAACCGCAAATGCAAGTGCAGCAACAAACTGCTGCACAAGCACCATCACAAACTGTACAACAAA
CAGTGAGTGATAAATTAAATATCAATACCGCTAGCGCATCAGACATTCAAAAAGCGTTGATTGGTATTGGGGCGAAAAAA
GCAGAGGCCATTGTGCAATACCGTGAAAAACACGGCAATTTCACTGCGGCAGAACAACTACTTGAAGTACAAGGCATTGG
TAAAGCTACGCTAGAGAAAAACCGAGATCGTATTGTGTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(57-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

64.103

97.5

0.625
  comEA/comE1 Glaesserella parasuis strain SC1401

52.542

98.333

0.517

Multiple sequence alignment