Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DXX82_RS04140 Genome accession   NZ_CP031477
Coordinates   864140..864808 (-) Length   222 a.a.
NCBI ID   WP_005695053.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 859140..869808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS04140 sxy/tfoX 864140..864808 (-) 669 WP_005695053.1 TfoX/Sxy family DNA transformation protein Regulator
  DXX82_RS04145 - 865039..865881 (+) 843 WP_005699077.1 patatin family protein -
  DXX82_RS04150 recA 866018..867073 (+) 1056 WP_005699076.1 recombinase RecA Machinery gene
  DXX82_RS04155 recX 867143..867595 (+) 453 WP_032804155.1 recombination regulator RecX -
  DXX82_RS04160 crcB 867570..867965 (-) 396 WP_005699075.1 fluoride efflux transporter CrcB -
  DXX82_RS04165 - 867966..868784 (-) 819 WP_005699078.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25484.96 Da        Isoelectric Point: 10.3912

>NTDB_id=307126 DXX82_RS04140 WP_005695053.1 864140..864808(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M27794]
MKILTIPNDNIIRVCNLLNQLIGDVTSKNLFTGYGLFHKDKDMFAVWINNKVYLRAKGELSVKLKGLGCKAFATNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLESALSKIGRIRDLPNLSIKYERALKKVGIDNVDILRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKEKGLNKLNEILSANGFRRCKRTLKKVE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=307126 DXX82_RS04140 WP_005695053.1 864140..864808(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M27794]
ATGAAAATCCTAACAATACCCAATGATAATATTATCAGAGTGTGTAATTTGCTAAATCAACTGATTGGAGATGTAACAAG
CAAAAACCTATTTACTGGATATGGATTATTCCATAAAGATAAGGATATGTTTGCTGTTTGGATTAATAATAAGGTTTACT
TGAGGGCTAAAGGTGAACTTTCTGTAAAATTAAAAGGGCTGGGCTGTAAAGCCTTTGCAACAAATGAACTCAATAAACGC
TTTGTGTTATCTGATTATTATGCTTTAACTGAAAGTATCTTGAAAGATAATGTATTAATGAGAACTTTGATCATTCTTTC
AATAACTCAAATAAGGAAGGAAAAACTCGAGTCTGCGCTCTCTAAGATTGGACGGATTCGTGATTTACCGAATTTATCTA
TTAAATATGAACGAGCACTAAAGAAAGTCGGTATTGATAATGTGGATATCTTACGACAAATAGGTGCTGAAAATGCAATT
GTTCGTTTGAAAAAAGCGGATATTGGTGCAACTGAAGCTTTTTATTGGCGACTTCGTGGCGCTTTAGAAAATCGTAATTG
TGAGTTTTATACTGAGAAAGAAAAGGAGAAAGGGCTTAATAAACTTAATGAAATACTTTCTGCAAATGGATTTAGGCGCT
GTAAACGGACTTTAAAAAAGGTTGAATAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-198)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

58.373

94.144

0.55

Multiple sequence alignment