Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   DVV14_RS17935 Genome accession   NZ_CP031473
Coordinates   335973..338030 (-) Length   685 a.a.
NCBI ID   WP_234425357.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 330973..343030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS17920 (DVV14_18015) clcA 332047..333447 (+) 1401 WP_029236033.1 H(+)/Cl(-) exchange transporter ClcA -
  DVV14_RS17925 (DVV14_18020) - 333566..334540 (+) 975 WP_064486254.1 TDT family transporter -
  DVV14_RS17930 (DVV14_18025) cqsA 334757..335938 (+) 1182 WP_064486253.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  DVV14_RS17935 (DVV14_18030) cqsS 335973..338030 (-) 2058 WP_234425357.1 hybrid sensor histidine kinase/response regulator Regulator
  DVV14_RS17940 (DVV14_18035) - 338150..341191 (-) 3042 WP_064486252.1 SMC family ATPase -
  DVV14_RS17945 (DVV14_18040) - 341201..342331 (-) 1131 WP_064486251.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 78743.13 Da        Isoelectric Point: 5.3043

>NTDB_id=307076 DVV14_RS17935 WP_234425357.1 335973..338030(-) (cqsS) [Vibrio coralliilyticus strain RE22]
MTAVLESVRKVYQYAEPNLTLVGWMGLLGFPTYYYVWSYLFPQPYESLTLRLFCSFLFAIIAFRHALPKHIQRYMPQYYL
ISIAICLPYFFSYMMFMNEWSTIWAMSFMASVFLHVLLVHQTRIMLLQAAISLLFAFITVYGFNFSLAMEKIVWPYLPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASFDVLSSLLPDDKSKTAEFYSMSHQELTIAREVLS
DADEVIQNGNETIDLLLTSIDENRVSTSTFRKHSLKRVTEDSLSSFAYKSSKDKQAVQFKCEQDAEVFGSDTLIKYALYN
LLKNAFYYQNGNHFQITVEIKCSDKNSTIVFRDNGVGIAPEVLENIFKDFYTFGKSGSYGLGLPFCRKVMQALGGRISCR
SELNEWTEFTLTFPHYHSARVDYIKLDLMKSKSALYVGETSVIARLLNEQSFYKGFTLNTVDLELANNREEYEFEYDLIF
IDLDAVITSPDQLAALENKLHFTEARIVFLYDENNRYHNDIERHLTIYPVEKHRMSLEPGRVLDELFFESPEPDRNLLPR
KEVRVGKTIVIADDNHSLRTYTSILLEQQGFEVIQAQNGQEVLDKLQNNLVDLVLMDIEMPQLNGLDAANAIRSSDSEYA
NIPILGHTGDSTSVAIDKIHQSGMNDYIIKPAGTEVLLDKISNWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=307076 DVV14_RS17935 WP_234425357.1 335973..338030(-) (cqsS) [Vibrio coralliilyticus strain RE22]
ATGACAGCAGTTCTGGAATCAGTTCGCAAAGTATACCAGTATGCAGAACCAAACCTCACGCTCGTAGGTTGGATGGGGTT
GCTTGGCTTTCCAACTTACTACTACGTCTGGTCCTACTTATTCCCTCAGCCATACGAAAGCCTGACGCTCAGGCTCTTCT
GTTCATTCCTATTCGCAATAATTGCTTTTCGGCATGCGCTTCCTAAACACATACAGCGTTATATGCCGCAATATTATCTC
ATCTCGATAGCGATCTGCCTGCCGTACTTCTTTAGCTATATGATGTTTATGAACGAATGGTCGACGATATGGGCGATGTC
GTTTATGGCTTCAGTTTTTCTCCATGTTCTGCTTGTTCATCAAACACGAATTATGCTTCTGCAAGCCGCGATTTCGTTGT
TGTTTGCTTTTATTACTGTCTACGGATTTAACTTTAGTTTGGCCATGGAGAAGATTGTGTGGCCATATTTGCCGATTTTT
CTCTTCACATATGTGTTTGGGAACCTGTTTTACTTCCGTAATCAGGTTGAACATGAGAGTAAAGTGTCTATAGCTAAGTC
CTTTGGCGCAGGAATCGCTCATGAAATGCGTAACCCGCTAAGTGCACTGAAAGCATCGTTTGACGTGCTAAGTTCCTTGT
TACCTGATGACAAGTCCAAAACTGCTGAATTTTACTCAATGTCTCATCAGGAATTAACCATTGCGAGAGAAGTACTCAGT
GATGCGGATGAAGTGATTCAGAATGGTAATGAAACCATTGATCTTCTGTTAACTTCTATTGATGAAAACCGTGTATCAAC
GTCGACATTCAGAAAGCATTCTTTGAAACGTGTTACGGAAGATTCTCTATCCAGCTTTGCTTACAAAAGCTCAAAGGACA
AACAGGCTGTTCAGTTCAAATGTGAACAGGATGCCGAAGTTTTTGGTAGTGATACGCTCATCAAGTATGCCTTGTATAAC
CTTCTCAAAAATGCATTTTATTATCAGAATGGCAATCACTTCCAAATTACTGTTGAAATAAAGTGCTCTGATAAAAACAG
TACCATCGTATTTCGGGATAACGGCGTTGGTATCGCCCCTGAAGTGCTTGAAAACATTTTTAAAGATTTCTATACCTTCG
GTAAGTCAGGCAGTTATGGCCTCGGTTTACCATTTTGTCGAAAAGTGATGCAAGCTTTAGGTGGCAGAATCAGCTGTCGG
TCTGAGTTGAATGAATGGACTGAATTCACGCTGACGTTCCCTCATTATCATTCTGCGAGAGTCGATTATATAAAACTGGA
TCTAATGAAATCTAAATCAGCCCTCTATGTTGGGGAAACAAGTGTTATTGCACGGCTCCTCAATGAACAGTCTTTCTACA
AAGGCTTTACCCTTAACACCGTTGACCTTGAGCTGGCAAACAATAGGGAAGAATACGAATTTGAATACGACTTGATATTC
ATCGATTTAGATGCAGTGATAACCTCACCTGATCAACTAGCAGCATTAGAGAATAAGCTTCACTTTACTGAAGCGAGAAT
CGTGTTTCTCTACGATGAGAACAACCGCTATCACAACGATATAGAAAGGCACCTCACCATTTATCCTGTTGAGAAGCATC
GAATGTCGCTAGAGCCAGGGCGTGTTTTGGACGAATTGTTCTTTGAGTCTCCTGAGCCTGACCGAAACTTACTCCCAAGA
AAAGAAGTCCGCGTGGGCAAAACGATTGTCATTGCAGACGACAATCATTCACTCCGTACTTACACGTCGATACTTTTAGA
ACAGCAGGGGTTTGAGGTGATTCAAGCTCAGAACGGGCAAGAAGTGTTAGATAAACTGCAGAACAACCTTGTCGATTTAG
TGCTAATGGATATTGAGATGCCACAACTGAATGGCCTTGATGCAGCGAATGCTATTCGTTCATCAGATAGTGAGTACGCC
AATATCCCGATTTTAGGCCATACTGGTGACTCTACATCTGTAGCTATCGATAAGATTCATCAGTCAGGGATGAATGATTA
TATTATTAAGCCTGCCGGTACAGAAGTACTGCTGGATAAAATATCGAACTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(314-415)

Response regulator receiver domain (Response_reg)

(569-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

52.256

100

0.524

Multiple sequence alignment