Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   DVV14_RS17930 Genome accession   NZ_CP031473
Coordinates   334757..335938 (+) Length   393 a.a.
NCBI ID   WP_064486253.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 329757..340938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS17915 (DVV14_18010) - 330662..331639 (+) 978 WP_019275095.1 GTP-binding protein -
  DVV14_RS17920 (DVV14_18015) clcA 332047..333447 (+) 1401 WP_029236033.1 H(+)/Cl(-) exchange transporter ClcA -
  DVV14_RS17925 (DVV14_18020) - 333566..334540 (+) 975 WP_064486254.1 TDT family transporter -
  DVV14_RS17930 (DVV14_18025) cqsA 334757..335938 (+) 1182 WP_064486253.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  DVV14_RS17935 (DVV14_18030) cqsS 335973..338030 (-) 2058 WP_234425357.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43999.12 Da        Isoelectric Point: 6.4970

>NTDB_id=307075 DVV14_RS17930 WP_064486253.1 334757..335938(+) (cqsA) [Vibrio coralliilyticus strain RE22]
MNTLNHYPPLPDFINNKINFYLDDLINTNKNGKHLVLGKRPQSGDLVLQSNDYLDLSNNPDIIDHHISSIMARKNSPFMS
GIFLQDESSKPEVEEKLAKYVGFQSCLLSQSGWAANTALLQTICDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNVK
HLNKLINRHGPGIVLVDSVYSTIGTIAPLVELVLLAKEYGCAILVDESHSLGTHGKHGAGLLQSLKLSHQVDFMTASLAK
TFAYRAGAIWCNNRANDCVPFVAYPAIFSSTMLPHELDRLDKTLDIIKEQDKERAYLQELSDYLKTNLANIGLTIRSQSQ
IIAVETGDERNTEKVRDFFESQGIFGAVFCRPATTPNKNIIRFSLNSSTTKEEVNKIIRACQTAYELPDMYFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=307075 DVV14_RS17930 WP_064486253.1 334757..335938(+) (cqsA) [Vibrio coralliilyticus strain RE22]
ATGAATACGCTTAACCATTACCCTCCTTTGCCAGATTTTATTAATAATAAAATAAATTTCTATCTGGATGACTTAATTAA
TACCAATAAGAACGGTAAGCATTTAGTTCTTGGAAAAAGGCCGCAAAGTGGCGACCTCGTTTTGCAAAGTAATGATTACC
TCGATTTATCCAATAACCCCGATATCATTGATCACCATATTAGTTCTATTATGGCACGTAAAAATAGCCCATTTATGTCA
GGTATATTTTTGCAGGATGAAAGCTCCAAGCCTGAAGTAGAAGAAAAACTCGCCAAGTATGTCGGGTTTCAATCTTGTTT
ACTTTCTCAATCTGGTTGGGCGGCCAATACTGCCTTGCTACAAACCATTTGTGACAGTGAAACAAATGTCTACATCGACT
TTTTTGCTCATATGTCTTTATGGGAAGGTGCGCGTATCGCCGGAGCTAACATCCATCCCTTTATGCATAATAACGTCAAG
CATTTGAATAAATTGATAAACAGACATGGCCCTGGAATCGTTCTTGTCGATTCGGTTTACAGTACCATAGGCACCATTGC
CCCCTTAGTCGAGCTCGTGTTACTCGCGAAGGAATATGGCTGTGCGATATTAGTCGATGAATCACACTCCCTAGGTACAC
ACGGTAAACATGGTGCTGGTTTGTTACAAAGCTTAAAACTAAGTCATCAAGTCGACTTTATGACCGCCAGTTTAGCAAAA
ACGTTTGCCTATCGAGCTGGTGCTATTTGGTGCAACAATCGCGCTAATGATTGTGTACCATTTGTGGCTTACCCCGCGAT
ATTTAGCTCTACAATGTTACCACATGAGTTGGATAGGCTCGATAAGACACTGGATATAATAAAAGAACAAGATAAAGAAA
GAGCTTACTTACAGGAGTTAAGCGATTATTTAAAAACTAACCTAGCAAATATCGGGCTAACTATTCGAAGTCAGTCGCAA
ATAATAGCGGTTGAAACGGGAGATGAACGTAACACCGAAAAAGTGAGAGACTTTTTTGAATCACAAGGAATATTTGGTGC
GGTATTTTGTCGACCTGCAACGACACCTAATAAAAACATAATACGTTTTTCACTTAATAGCTCTACCACTAAAGAAGAAG
TAAATAAAATCATTCGTGCTTGTCAGACGGCTTACGAACTTCCAGATATGTATTTTATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

63.117

97.964

0.618

Multiple sequence alignment