Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   DVV14_RS07315 Genome accession   NZ_CP031472
Coordinates   1648677..1650071 (-) Length   464 a.a.
NCBI ID   WP_019275536.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1643677..1655071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS07280 (DVV14_07335) moaE 1644370..1644825 (-) 456 WP_006963011.1 molybdopterin synthase catalytic subunit MoaE -
  DVV14_RS07285 (DVV14_07340) moaD 1644825..1645070 (-) 246 WP_064487843.1 molybdopterin synthase sulfur carrier subunit -
  DVV14_RS07290 (DVV14_07345) moaC 1645067..1645546 (-) 480 WP_006963013.1 cyclic pyranopterin monophosphate synthase MoaC -
  DVV14_RS07295 (DVV14_07350) moaB 1645559..1646071 (-) 513 WP_006963014.1 molybdenum cofactor biosynthesis protein B -
  DVV14_RS07300 (DVV14_07355) moaA 1646161..1647150 (-) 990 WP_064488197.1 GTP 3',8-cyclase MoaA -
  DVV14_RS07305 (DVV14_07360) - 1647456..1648343 (+) 888 WP_019275535.1 YvcK family protein -
  DVV14_RS07310 (DVV14_07365) luxU 1648329..1648673 (-) 345 WP_029236080.1 quorum-sensing phosphorelay protein LuxU -
  DVV14_RS07315 (DVV14_07370) luxO 1648677..1650071 (-) 1395 WP_019275536.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  DVV14_RS07320 (DVV14_07375) uvrB 1650335..1652365 (-) 2031 WP_064487844.1 excinuclease ABC subunit UvrB -
  DVV14_RS07330 (DVV14_07385) - 1653392..1653985 (+) 594 WP_021458194.1 outer membrane beta-barrel protein -
  DVV14_RS07335 (DVV14_07390) - 1654063..1654503 (-) 441 WP_129542192.1 polymer-forming cytoskeletal protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51738.07 Da        Isoelectric Point: 5.8826

>NTDB_id=307047 DVV14_RS07315 WP_019275536.1 1648677..1650071(-) (luxO) [Vibrio coralliilyticus strain RE22]
MQHNTQTQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLHAVKQKM
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSHTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLAPEVVSRFAQYEWPGNVRQLQNVLRNVVVLNNGENISMDMLPPPLNQPVENQI
RVDLQDKDSFSVHDIFPLWLTEKKAIEQAIQACEGNIPKAAGYLDVSPSTLYRKLQNWNTKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=307047 DVV14_RS07315 WP_019275536.1 1648677..1650071(-) (luxO) [Vibrio coralliilyticus strain RE22]
ATGCAACATAATACGCAAACACAAAAGTCCAAATATCTTTTGATGGTTGAAGATACTGCGTCGGTCGCGGCGTTGTACCG
TTCTTATCTCACCCCTCTGGGTATCGATATCAACATTGTTGGTACCGGGCGCGATGCCATTGAAAGCCTCAACTTTCGCA
CTCCTGATTTAATCCTATTGGACCTTCGTCTTCCCGACATGACAGGTATGGATGTTTTGCATGCAGTGAAACAGAAAATG
CCTGATGTTCCAGTGATCTTCATGACGGCCCATGGCTCGATTGATACCGCTGTAGAAGCGATGCGTCATGGTGCTCAGGA
TTTCCTTATCAAGCCGTGTGAAGCGGACCGACTCCGTGTCACGGTTAACAACGCTATTCGCAAAGCGACCAAGTTGAAAA
ATGAAGCTGACAATCCGGGTAACCAGAATTATCAAGGCTTTATCGGTAGTAGCCACACTATGCAGGCTGTGTATCGTACC
ATCGACTCCGCCGCATCCAGTAAAGCCAGTATTTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCAGAGGC
CATTCATGCGGCAAGTAAGCGTGGTGACAAGCCCTTCATCGCGATCAACTGTGCGGCTATTCCAAAAGATCTGATTGAAA
GTGAATTGTTTGGTCATGTGAAAGGCGCGTTTACCGGCGCTGCCACTGATCGACAAGGCGCGGCTGAGTTGGCTGATGGA
GGCACGCTGTTCCTTGACGAACTGTGTGAGATGGATCTGGATCTGCAAACTAAGCTACTACGTTTTATTCAGACGGGTAC
CTTCCAGAAAGTCGGCTCTTCGAAAATGAAAAGCGTCGACGTGCGTTTCGTCTGTGCAACCAACCGAGACCCTTGGAAAG
AGGTGCAGGAAGGTCGCTTCCGTGAAGACTTATATTATCGTTTATACGTAATTCCTTTGCACCTACCTCCTTTGAGGGAG
CGTGGCGATGATGTCATAGAAATTGCTTATTCTCTGCTAGGCTTTATGTCTAAAGAGGAAGGAAAAGACTTTGTCCGACT
GGCACCAGAAGTTGTAAGCCGCTTCGCTCAATACGAGTGGCCGGGTAATGTTCGTCAATTGCAAAACGTACTGAGAAACG
TCGTGGTTCTTAACAACGGTGAAAACATCTCCATGGATATGTTGCCGCCTCCATTGAATCAGCCGGTCGAAAATCAGATC
AGGGTAGACTTGCAGGACAAAGACAGTTTTTCTGTGCATGACATTTTCCCTCTGTGGTTAACAGAGAAGAAAGCTATTGA
GCAAGCGATTCAGGCCTGTGAAGGGAATATTCCTAAAGCCGCGGGCTATTTAGACGTCAGTCCATCAACGCTTTATCGCA
AGCTGCAAAACTGGAACACAAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.946

96.552

0.849
  pilR Pseudomonas aeruginosa PAK

38.085

96.767

0.369

Multiple sequence alignment