Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BRN51_RS07490 Genome accession   NZ_CP031462
Coordinates   1497786..1499237 (-) Length   483 a.a.
NCBI ID   WP_011258365.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain PX079     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1484564..1504088 1497786..1499237 within 0


Gene organization within MGE regions


Location: 1484564..1504088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRN51_RS25295 - 1484657..1485151 (+) 495 WP_324250706.1 DUF6714 family protein -
  BRN51_RS07430 (BRN51_07435) - 1485218..1486537 (-) 1320 WP_115877354.1 IS701-like element ISXo15 family transposase -
  BRN51_RS07435 (BRN51_07440) - 1486674..1487642 (+) 969 WP_011258529.1 IS5-like element ISXo1 family transposase -
  BRN51_RS07440 (BRN51_07445) coaE 1487768..1488376 (-) 609 WP_011258357.1 dephospho-CoA kinase -
  BRN51_RS07445 (BRN51_07450) - 1488390..1489253 (-) 864 WP_011258358.1 A24 family peptidase -
  BRN51_RS07450 (BRN51_07455) pilC 1489260..1490519 (-) 1260 WP_011408067.1 type II secretion system F family protein Machinery gene
  BRN51_RS07455 (BRN51_07460) pilA2 1490874..1491299 (+) 426 WP_011408068.1 pilin Machinery gene
  BRN51_RS07460 (BRN51_07465) - 1491434..1493023 (+) 1590 WP_011408069.1 phosphoethanolamine transferase -
  BRN51_RS07465 (BRN51_07470) - 1493034..1493663 (+) 630 WP_011408070.1 hypothetical protein -
  BRN51_RS07470 (BRN51_07475) - 1493633..1495159 (+) 1527 WP_041182621.1 membrane protein -
  BRN51_RS07475 (BRN51_07480) pilB 1495194..1496927 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BRN51_RS07480 (BRN51_07485) - 1496936..1497196 (-) 261 WP_027703280.1 cell filamentation protein Fic -
  BRN51_RS24970 - 1497284..1497445 (-) 162 WP_153296778.1 hypothetical protein -
  BRN51_RS07485 (BRN51_07490) - 1497507..1497713 (-) 207 WP_027703281.1 YhfG family protein -
  BRN51_RS07490 (BRN51_07495) pilR 1497786..1499237 (-) 1452 WP_011258365.1 sigma-54 dependent transcriptional regulator Regulator
  BRN51_RS07495 (BRN51_07500) - 1499508..1501121 (-) 1614 WP_012444444.1 HAMP domain-containing sensor histidine kinase -
  BRN51_RS07500 (BRN51_07505) sucC 1501355..1502524 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  BRN51_RS07505 (BRN51_07510) sucD 1502549..1503424 (+) 876 WP_012444445.1 succinate--CoA ligase subunit alpha -
  BRN51_RS07510 (BRN51_07515) - 1503597..1504088 (+) 492 WP_027703282.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52462.22 Da        Isoelectric Point: 6.8290

>NTDB_id=306952 BRN51_RS07490 WP_011258365.1 1497786..1499237(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PX079]
MRRAPLDNCRLSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=306952 BRN51_RS07490 WP_011258365.1 1497786..1499237(-) (pilR) [Xanthomonas oryzae pv. oryzae strain PX079]
TTGCGCCGCGCCCCACTCGACAATTGTCGACTATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462

Multiple sequence alignment