Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D9K49_RS12920 Genome accession   NZ_CP036202
Coordinates   2670150..2670887 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain L725     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2665150..2675887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9K49_RS12890 (D9K49_12890) yfiL 2665308..2665673 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  D9K49_RS12895 (D9K49_12895) aroF 2665883..2666953 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  D9K49_RS12900 (D9K49_12900) tyrA 2666964..2668085 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  D9K49_RS12905 (D9K49_12905) pheA 2668128..2669288 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  D9K49_RS12910 (D9K49_12910) pheL 2669387..2669434 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  D9K49_RS12915 (D9K49_12915) raiA 2669538..2669879 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  D9K49_RS12920 (D9K49_12920) comL 2670150..2670887 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  D9K49_RS12925 (D9K49_12925) rluD 2671022..2672002 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D9K49_RS12930 (D9K49_12930) yfiH 2671999..2672730 (+) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  D9K49_RS12935 (D9K49_12935) clpC 2672860..2675433 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=306846 D9K49_RS12920 WP_000197686.1 2670150..2670887(-) (comL) [Escherichia coli strain L725]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=306846 D9K49_RS12920 WP_000197686.1 2670150..2670887(-) (comL) [Escherichia coli strain L725]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment