Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   KAN02_RS01810 Genome accession   NZ_CP036171
Coordinates   386010..386459 (+) Length   149 a.a.
NCBI ID   WP_087606427.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain KAN02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 381010..391459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAN02_RS01780 (KAN02_01780) - 381474..383579 (-) 2106 WP_087606426.1 RelA/SpoT family protein -
  KAN02_RS01785 (KAN02_01785) - 383618..383749 (-) 132 WP_102990545.1 hypothetical protein -
  KAN02_RS01790 (KAN02_01790) rpoZ 383788..384066 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KAN02_RS01795 (KAN02_01795) gmk 384139..384768 (-) 630 WP_002051739.1 guanylate kinase -
  KAN02_RS01800 (KAN02_01800) ispH 384891..385841 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KAN02_RS01810 (KAN02_01810) fimU 386010..386459 (+) 450 WP_087606427.1 GspH/FimT family pseudopilin Machinery gene
  KAN02_RS01815 (KAN02_01815) pilV 386456..386956 (+) 501 WP_002051742.1 type IV pilus modification protein PilV Machinery gene
  KAN02_RS01820 (KAN02_01820) pilW 386958..387995 (+) 1038 WP_087606428.1 PilW family protein Machinery gene
  KAN02_RS01825 (KAN02_01825) - 387992..388774 (+) 783 WP_087606429.1 pilus assembly PilX N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16177.78 Da        Isoelectric Point: 8.5211

>NTDB_id=306644 KAN02_RS01810 WP_087606427.1 386010..386459(+) (fimU) [Acinetobacter nosocomialis strain KAN02]
MRGMIPQEGFTLIELIVTIVVMAIIAVMAVPMFGDMLNNQNLNRSSEDLVSSINQARMKAIVERRQVKVQLNSTYVADSD
NQINWVPSGKAQLKTGSNTSIVFLMSGLVKDATGDTTFEICNTVSGNKSKIINVSRMGSIQSITMGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=306644 KAN02_RS01810 WP_087606427.1 386010..386459(+) (fimU) [Acinetobacter nosocomialis strain KAN02]
ATGAGGGGAATGATTCCGCAAGAAGGGTTCACCTTAATTGAGCTCATAGTGACAATTGTGGTTATGGCAATTATTGCTGT
GATGGCTGTACCAATGTTTGGGGATATGTTGAATAATCAAAATTTGAATAGAAGTTCAGAGGATCTAGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTATAGTCGAGCGTAGACAAGTAAAAGTGCAATTAAATTCTACATATGTGGCAGATAGTGAT
AATCAAATTAATTGGGTACCAAGCGGAAAAGCTCAATTAAAAACAGGATCCAATACTTCTATAGTATTTTTAATGTCCGG
TTTGGTAAAAGATGCAACCGGAGATACAACTTTTGAAATTTGTAATACGGTATCTGGTAATAAATCAAAAATTATTAATG
TTTCAAGAATGGGATCAATTCAGTCAATCACGATGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

37.107

100

0.396