Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SDEG_RS04070 Genome accession   NC_012891
Coordinates   802447..804192 (+) Length   581 a.a.
NCBI ID   WP_012766835.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 797447..809192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS04050 (SDEG_0817) - 797909..798289 (+) 381 WP_003056276.1 DUF1149 family protein -
  SDEG_RS04055 (SDEG_0818) - 798289..799137 (+) 849 WP_012766832.1 DegV family protein -
  SDEG_RS04060 (SDEG_0819) - 799257..800465 (+) 1209 WP_012766833.1 CCA tRNA nucleotidyltransferase -
  SDEG_RS04065 (SDEG_0820) - 800462..802339 (+) 1878 WP_012766834.1 ABC-F family ATP-binding cassette domain-containing protein -
  SDEG_RS04070 (SDEG_0821) rcrP 802447..804192 (+) 1746 WP_012766835.1 ABC transporter ATP-binding protein Regulator
  SDEG_RS04075 (SDEG_0822) rcrQ 804192..805964 (+) 1773 WP_003061906.1 ABC transporter ATP-binding protein Regulator
  SDEG_RS04080 (SDEG_0823) gdhA 806154..807503 (+) 1350 WP_003056314.1 NADP-specific glutamate dehydrogenase -
  SDEG_RS04085 (SDEG_0824) - 807628..808038 (+) 411 WP_012766836.1 peptide deformylase -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 65214.86 Da        Isoelectric Point: 5.6010

>NTDB_id=30664 SDEG_RS04070 WP_012766835.1 802447..804192(+) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MGLIWSYLSSKPKWLALDILGGLLFVLVNLGLPTILARMIDQGIMQQDTKALYGWTLVMFVIIVLGVLGRIILSYASGKL
TTTMIKELRNDMYRQLQDYSHTEYEKIGVASLVTRMTSDAFVLMQFAEMSLRLGVVTPLMMIFSVLMIFLTSPSLAWIVA
VSMPFLVLVVVYVAVKTRPLSEKQQESLDHINQLVRENLTGLRVIRAFSREAFQQERFDERNQEYAGISKRLFTLTGLTE
PLFVQIIIAMIVAIVWFALDPLAKGQIQIGDLVAFIEYSFHALFSFLMFANLFTMYPKMAVSSKRIKEVMDMPISISKNE
DGVTETLTRGYLEFDNVTFAYPGETESPVLHNISFKTKPGETIAFIGSTGSGKSSLVNLIPRFYDVTFGRILVDGVDVRD
YQLKSLRAKIGFIPQKALLFTGTIEDNLKYGKADASYWELDEATDVSQARAFIASREKGYQTHLAEAGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYQTDAALRKRLKEVTEEATVLIVAQRVGTIMDADQIIVLDQGEIVGRGKHEELMATNA
IYREIADSQLNKGNLMEEEVD

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=30664 SDEG_RS04070 WP_012766835.1 802447..804192(+) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGGGGCTGATTTGGTCGTATTTATCATCAAAGCCTAAGTGGTTGGCTTTGGACATTTTAGGTGGTCTATTATTTGTTCT
GGTTAATTTAGGATTACCCACTATTTTAGCTCGGATGATAGACCAAGGAATTATGCAGCAGGATACCAAAGCCTTATATG
GCTGGACGTTGGTCATGTTTGTCATTATTGTGTTAGGTGTTCTTGGTCGAATTATCTTATCCTACGCATCTGGTAAGTTA
ACGACAACCATGATCAAGGAGCTGCGCAATGACATGTATCGTCAGTTGCAGGATTACTCTCATACAGAATATGAAAAAAT
TGGGGTTGCTTCTTTGGTTACCCGAATGACAAGTGATGCCTTTGTGCTCATGCAGTTTGCTGAAATGTCTTTACGTTTAG
GAGTAGTGACGCCCTTAATGATGATTTTTTCAGTGCTGATGATTTTCTTGACAAGTCCATCGTTAGCATGGATTGTGGCG
GTATCCATGCCTTTTTTGGTGCTGGTTGTTGTTTATGTCGCCGTCAAAACAAGGCCTCTCTCTGAAAAACAACAAGAAAG
TCTAGACCACATTAATCAGTTAGTCAGAGAAAATTTGACTGGCTTGCGCGTGATTAGAGCCTTTTCGAGAGAAGCATTTC
AACAGGAACGTTTTGATGAGCGTAATCAAGAATACGCCGGCATTTCTAAACGTCTCTTCACCTTAACAGGATTGACAGAA
CCGCTATTTGTGCAAATCATTATTGCCATGATTGTAGCCATTGTTTGGTTTGCCTTAGACCCTTTGGCTAAGGGACAAAT
TCAAATTGGGGATTTGGTAGCCTTTATCGAGTATAGTTTTCATGCCCTTTTTTCGTTTTTGATGTTTGCTAATCTCTTTA
CCATGTATCCTAAAATGGCAGTTTCCAGCAAACGGATCAAAGAAGTCATGGACATGCCAATCTCTATTTCTAAAAATGAA
GATGGGGTAACAGAGACCTTGACAAGAGGTTACCTCGAATTTGACAATGTCACCTTTGCCTATCCTGGAGAAACAGAAAG
TCCTGTTCTACATAACATTTCTTTTAAAACCAAGCCTGGGGAAACCATCGCTTTTATTGGCTCAACAGGGTCAGGAAAAT
CATCCTTGGTGAATTTAATTCCTCGATTTTACGACGTGACGTTTGGGAGAATCTTGGTCGATGGGGTAGATGTCAGAGAT
TATCAGTTAAAATCTCTTCGTGCTAAAATTGGTTTCATCCCACAAAAAGCTCTGCTATTTACAGGAACTATCGAAGACAA
TTTAAAATATGGTAAGGCAGATGCTAGCTATTGGGAATTAGATGAAGCTACGGATGTGTCTCAAGCTAGAGCATTTATTG
CTAGCCGCGAAAAAGGCTATCAGACCCATCTAGCAGAAGCAGGAAGCAATTTATCAGGTGGTCAGAAACAACGGCTATCG
ATTGCCCGTGCGGTTGTTAAAAAACCCGATATTTATATCTTTGATGATTCTTTTTCGGCACTGGATTACCAAACCGATGC
TGCTTTAAGGAAGCGCCTGAAAGAAGTAACAGAGGAAGCGACTGTTTTGATTGTAGCTCAACGGGTTGGGACTATCATGG
ATGCCGATCAAATCATCGTTCTAGATCAAGGTGAAATTGTCGGTCGAGGCAAGCATGAGGAATTGATGGCAACCAATGCT
ATTTACCGTGAAATTGCTGATTCGCAATTAAACAAAGGAAATCTCATGGAAGAGGAGGTGGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(26-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.962

91.738

0.367

Multiple sequence alignment