Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SDEG_RS04075 Genome accession   NC_012891
Coordinates   804192..805964 (+) Length   590 a.a.
NCBI ID   WP_003061906.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 799192..810964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS04060 (SDEG_0819) - 799257..800465 (+) 1209 WP_012766833.1 CCA tRNA nucleotidyltransferase -
  SDEG_RS04065 (SDEG_0820) - 800462..802339 (+) 1878 WP_012766834.1 ABC-F family ATP-binding cassette domain-containing protein -
  SDEG_RS04070 (SDEG_0821) rcrP 802447..804192 (+) 1746 WP_012766835.1 ABC transporter ATP-binding protein Regulator
  SDEG_RS04075 (SDEG_0822) rcrQ 804192..805964 (+) 1773 WP_003061906.1 ABC transporter ATP-binding protein Regulator
  SDEG_RS04080 (SDEG_0823) gdhA 806154..807503 (+) 1350 WP_003056314.1 NADP-specific glutamate dehydrogenase -
  SDEG_RS04085 (SDEG_0824) - 807628..808038 (+) 411 WP_012766836.1 peptide deformylase -
  SDEG_RS04090 (SDEG_0825) - 808226..810250 (-) 2025 WP_012766837.1 surface-anchored 5'-nucleotidase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 66009.47 Da        Isoelectric Point: 5.7845

>NTDB_id=30665 SDEG_RS04075 WP_003061906.1 804192..805964(+) (rcrQ) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MAEQHVFKRVWTYLRAYRGLIFLAVFLKIISAVMSVLEPFVLGLVITELSSNLLDMAKGIEGAGINTSYIAFLLLVYFIR
ALCYEIGAYGSNYVMTKAVQSTIRDLRQALSQKINRIPVSYFDQHQFGDMLGRFTSDVETVSNALQQSFLQIVNAFLTIF
LVMGMVLYLNLTLALIVIVAIPIIYASSQFILKKSQPYFKEQAKVLGEMNGFVQENLSGFNVLKLYGREEASEQAFHQIT
EHLQEVGFKASFLSGIMMPVLHFISDSVYMIVALVAGLQVMAGQLTIGNMQAFVQYIWQISQPIQTITQLAGLLQSAKSS
LERIFAVLDEADDAMLVTDQLDEDLTGQVSFNHVDFSYQSDKPLIKEFTLDVNPGEMIAIVGPTGAGKTTLINLLMRFYD
VNKGSITVDGHDIRDLSRQSYRRQFGMVLQDAWLYEGTIQDNLRFGNLEASDEAIVEAAKAANVDHFIRTLPGGYHMVMN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHDSLLAAQGFYFDLYHSQFKSSQP

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=30665 SDEG_RS04075 WP_003061906.1 804192..805964(+) (rcrQ) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGGCAGAGCAACATGTTTTTAAGCGGGTGTGGACCTATTTAAGGGCCTACCGTGGCTTAATCTTTTTAGCAGTTTTCCT
TAAAATTATCAGTGCTGTTATGAGTGTCTTGGAACCCTTTGTGCTTGGTTTAGTTATTACAGAATTGTCATCTAATCTTC
TTGATATGGCTAAGGGAATTGAAGGAGCAGGGATTAATACCTCTTATATTGCTTTTTTACTGCTTGTCTATTTTATTCGT
GCATTATGTTATGAAATCGGAGCCTATGGGTCAAATTATGTCATGACCAAGGCTGTTCAATCTACTATTCGTGATTTGAG
ACAGGCCTTGAGTCAAAAAATTAATCGTATTCCTGTCTCTTATTTTGACCAACACCAGTTTGGGGATATGCTGGGACGCT
TTACCTCAGATGTTGAGACAGTGTCAAATGCTTTGCAACAGTCTTTCTTGCAGATTGTCAATGCCTTTCTCACCATTTTT
CTCGTGATGGGAATGGTCTTGTACCTCAATCTGACACTAGCTTTGATTGTGATTGTTGCTATTCCTATTATCTATGCTTC
ATCTCAATTCATTTTAAAAAAATCACAACCTTATTTTAAAGAGCAAGCTAAGGTGTTAGGAGAGATGAATGGTTTTGTTC
AGGAAAATCTATCGGGTTTTAACGTCTTAAAACTTTACGGCCGCGAAGAAGCCTCAGAGCAAGCCTTCCATCAGATTACT
GAACACTTGCAAGAGGTTGGGTTTAAGGCAAGCTTTTTATCCGGTATTATGATGCCTGTTTTGCATTTTATTTCTGATTC
TGTCTATATGATTGTTGCTTTGGTCGCAGGTCTGCAAGTTATGGCAGGACAATTGACCATTGGGAATATGCAAGCTTTTG
TTCAATATATTTGGCAAATCAGTCAGCCAATTCAAACCATTACCCAGTTAGCAGGTTTATTACAGAGTGCTAAATCATCC
TTAGAACGTATTTTTGCGGTTCTGGATGAGGCAGATGATGCCATGCTTGTGACAGATCAACTGGATGAGGATTTAACAGG
TCAAGTCTCATTTAACCATGTGGATTTTTCCTATCAGTCTGATAAACCTTTGATCAAAGAGTTTACACTTGATGTTAACC
CCGGTGAGATGATTGCGATTGTAGGACCAACTGGAGCTGGGAAAACGACTCTCATTAATCTCTTGATGCGTTTTTATGAT
GTTAATAAAGGATCTATTACTGTTGATGGGCATGATATTCGTGACCTGTCACGTCAATCCTATCGTCGCCAATTTGGTAT
GGTCCTACAAGATGCTTGGCTTTACGAAGGGACAATCCAAGATAACCTTCGCTTTGGGAACCTTGAAGCCAGCGATGAGG
CTATTGTAGAAGCAGCCAAAGCTGCCAATGTGGATCATTTTATCAGAACCTTGCCAGGTGGGTACCACATGGTGATGAAC
CAAGAATCTAGTAATATTTCCTTAGGTCAAAAACAACTCTTAACCATTGCAAGGGCCTTGTTGGCTGATCCTAAAATTCT
GATTTTAGATGAAGCGACCTCTTCAGTAGATACTAGGCTAGAATTATTGATTCAAAAGGCGATGAAGCGGTTAATGAAAG
GACGAACAAGCTTTGTGATCGCTCACCGTCTGTCTACAATTCAAGAAGCTGATAAGATTCTAGTATTAAAAGATGGTCAG
ATCATTGAACAAGGGAACCATGATAGTTTATTGGCTGCTCAAGGTTTCTATTTTGATCTCTATCATAGTCAATTTAAATC
CAGTCAACCCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.463

99.831

0.434