Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DWF74_RS13740 Genome accession   NZ_CP031396
Coordinates   3069058..3069462 (-) Length   134 a.a.
NCBI ID   WP_025131048.1    Uniprot ID   -
Organism   Pseudomonas protegens strain FD6     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064058..3074462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWF74_RS13725 (DWF74_13725) - 3065881..3067944 (-) 2064 WP_110652425.1 methyl-accepting chemotaxis protein -
  DWF74_RS13730 (DWF74_13730) - 3068085..3068624 (-) 540 WP_102881161.1 chemotaxis protein CheW -
  DWF74_RS13735 (DWF74_13735) pilH 3068635..3069000 (-) 366 WP_011064000.1 twitching motility response regulator PilH -
  DWF74_RS13740 (DWF74_13740) pilG 3069058..3069462 (-) 405 WP_025131048.1 twitching motility response regulator PilG Regulator
  DWF74_RS13745 (DWF74_13745) gshB 3069699..3070670 (+) 972 WP_102881162.1 glutathione synthase -
  DWF74_RS13750 (DWF74_13750) - 3070801..3071700 (+) 900 WP_102881163.1 energy transducer TonB -
  DWF74_RS13755 (DWF74_13755) - 3071830..3072399 (+) 570 WP_102862072.1 YqgE/AlgH family protein -
  DWF74_RS13760 (DWF74_13760) ruvX 3072399..3072836 (+) 438 WP_102862073.1 Holliday junction resolvase RuvX -
  DWF74_RS13765 (DWF74_13765) pyrR 3072953..3073459 (+) 507 WP_060841533.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14766.31 Da        Isoelectric Point: 7.3848

>NTDB_id=306539 DWF74_RS13740 WP_025131048.1 3069058..3069462(-) (pilG) [Pseudomonas protegens strain FD6]
MEQHSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALSKIVDHHPGIIFVDIMMPRLDGYQTCALVKNHSAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPDFVALAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=306539 DWF74_RS13740 WP_025131048.1 3069058..3069462(-) (pilG) [Pseudomonas protegens strain FD6]
ATGGAACAGCATTCCAACGCCTTGAAGGTGATGGTGATCGACGATTCGAAGACGATTCGCCGCACGGCCGAAATGCTGCT
GAAGAACGTCGGCTGTGAAGTCATTACCGCAGTGGACGGCTTCGAAGCGCTGTCGAAGATCGTCGACCACCACCCCGGAA
TCATTTTCGTCGACATCATGATGCCGCGGCTCGACGGTTATCAGACCTGTGCGCTGGTGAAGAACCACAGCGCGTTCAAG
TCCATTCCCGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGCTCCGACCAGTT
TTTGACCAAACCCTTCAGCAAGGAAGAACTGCTGAGCGCAATCAAGGCCCACGTTCCGGACTTTGTCGCGCTTGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76

93.284

0.709
  vicR Streptococcus mutans UA159

43.59

87.313

0.381

Multiple sequence alignment