Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DWF74_RS11210 Genome accession   NZ_CP031396
Coordinates   2527278..2528606 (+) Length   442 a.a.
NCBI ID   WP_115580964.1    Uniprot ID   -
Organism   Pseudomonas protegens strain FD6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2522278..2533606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWF74_RS11190 (DWF74_11190) pgeF 2523912..2524637 (-) 726 WP_102865462.1 peptidoglycan editing factor PgeF -
  DWF74_RS11195 (DWF74_11195) rluD 2524634..2525596 (-) 963 WP_102865461.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DWF74_RS11200 (DWF74_11200) - 2525747..2526769 (+) 1023 WP_102882249.1 outer membrane protein assembly factor BamD -
  DWF74_RS11205 (DWF74_11205) - 2526894..2527127 (+) 234 WP_102865514.1 PP0621 family protein -
  DWF74_RS11210 (DWF74_11210) pilR 2527278..2528606 (+) 1329 WP_115580964.1 sigma-54 dependent transcriptional regulator Regulator
  DWF74_RS11215 (DWF74_11215) thiO 2528603..2529703 (-) 1101 WP_110652086.1 glycine oxidase ThiO -
  DWF74_RS11220 (DWF74_11220) - 2529760..2530161 (-) 402 WP_115580965.1 type IV pilin protein -
  DWF74_RS11225 (DWF74_11225) - 2530177..2530470 (-) 294 WP_240322045.1 hypothetical protein -
  DWF74_RS11230 (DWF74_11230) - 2530682..2531122 (-) 441 WP_115580966.1 PilX N-terminal domain-containing pilus assembly protein -
  DWF74_RS11235 (DWF74_11235) - 2531164..2531874 (-) 711 WP_115580967.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DWF74_RS11240 (DWF74_11240) pilV 2531883..2532314 (-) 432 WP_102865454.1 type IV pilus modification protein PilV -
  DWF74_RS11245 (DWF74_11245) - 2532705..2533229 (+) 525 WP_102865453.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49623.44 Da        Isoelectric Point: 8.1541

>NTDB_id=306535 DWF74_RS11210 WP_115580964.1 2527278..2528606(+) (pilR) [Pseudomonas protegens strain FD6]
MNPMPRVLVVDEAMEVRALVEITLGRMRLHTQSARTLQEARTHLARERFDLCLTDLHLPDGSGLDLLLHIRQCHPQLPVA
LLSNDPGTQACALEVGACDLLHKPLHPMRLREWISSRLKRLPTATKKLPDHQLLGHSPPMDNLRQHIDKLAPSLAAVYIS
GESGSGKERVARLIHQLGPRARAPFIPVNCGAIPGELMESEFFGHRKGSFSGALADQPGLFQAAEGGTLFLDEVADLPLA
MQVKLLRALQERSVRPVGSQEERAVDVRILCATHKDLKCEVESGRFRQDLYYRLNVIELRVPALRERPGDIEILARHILQ
RLAKSGDKPATQLSPQALQALERYDFPGNVRELENLLERAQTLCEGPWIELSDLHLPVSEHQDLPAPSLPPSLDLALHLQ
QVERHLLLQALEESRWNRTAAARRLSLSLRSMRYRMKKLGLN

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=306535 DWF74_RS11210 WP_115580964.1 2527278..2528606(+) (pilR) [Pseudomonas protegens strain FD6]
ATGAACCCAATGCCTAGGGTGCTGGTGGTCGATGAGGCCATGGAAGTCCGTGCCCTCGTGGAAATCACCCTCGGCCGCAT
GCGCCTGCACACCCAAAGTGCCCGCACCTTGCAGGAAGCCCGGACTCACCTGGCCCGGGAGCGCTTCGACCTATGCCTGA
CAGACCTGCATTTGCCGGATGGCAGCGGACTGGACCTGCTGCTGCATATTCGCCAATGCCACCCTCAATTGCCGGTCGCA
CTTCTAAGCAATGACCCAGGCACGCAGGCCTGCGCCCTGGAAGTCGGGGCTTGCGACCTGCTGCACAAGCCGCTACACCC
CATGCGCCTTCGAGAATGGATAAGCAGCAGACTGAAGCGGCTGCCCACCGCCACAAAAAAACTACCCGACCATCAGTTGT
TGGGGCATTCACCGCCCATGGACAACCTGCGCCAACACATCGACAAGTTGGCCCCCAGCCTGGCGGCGGTCTACATCAGC
GGCGAATCCGGCAGTGGCAAGGAGCGAGTGGCGCGTTTGATCCACCAGTTGGGTCCCAGGGCCAGGGCGCCCTTCATTCC
GGTCAACTGTGGCGCCATTCCTGGCGAACTGATGGAGAGTGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGTGGCGCCC
TGGCTGATCAGCCTGGACTGTTCCAGGCCGCTGAGGGGGGAACCCTGTTCCTCGACGAGGTCGCCGACCTGCCTCTTGCC
ATGCAAGTGAAGCTACTGCGTGCACTGCAGGAAAGGTCCGTGCGTCCGGTGGGCAGCCAGGAGGAAAGAGCCGTCGATGT
GCGGATTCTCTGTGCCACTCACAAGGATCTGAAGTGCGAGGTAGAGTCCGGCCGCTTTCGCCAGGATCTCTACTACCGCT
TGAATGTGATCGAACTGCGAGTCCCCGCGCTGCGCGAGCGCCCGGGAGATATCGAGATACTGGCGCGGCACATTCTGCAA
CGCCTGGCCAAATCCGGCGACAAGCCTGCCACCCAACTAAGCCCGCAAGCACTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAACGTACGTGAACTGGAGAACCTGCTGGAGCGGGCCCAGACCCTTTGCGAGGGTCCGTGGATAGAGCTGAGCGACC
TGCATCTGCCTGTCAGTGAACACCAGGACCTTCCCGCCCCTTCGCTCCCTCCCAGCCTGGACCTCGCGCTGCACCTGCAA
CAGGTGGAGCGCCATTTATTGCTCCAGGCCCTGGAGGAAAGCCGCTGGAACCGCACAGCGGCGGCCCGACGGCTGAGTCT
GTCCTTGCGTTCGATGCGTTACCGCATGAAGAAGCTTGGCCTGAATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Response regulator receiver domain (Response_reg)

(7-113)

Sigma-54 interaction domain (Sigma54_activat)

(133-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.302

100

0.624
  pilR Acinetobacter baumannii strain A118

44.469

100

0.464

Multiple sequence alignment