Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | DMO12_RS08320 | Genome accession | NZ_CP031380 |
| Coordinates | 1733825..1734205 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii ACICU | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1728825..1739205
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DMO12_RS08290 (DMO12_04920) | kdsB | 1729728..1730489 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| DMO12_RS08295 (DMO12_04923) | - | 1730501..1731481 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| DMO12_RS08300 (DMO12_04926) | - | 1731493..1731834 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| DMO12_RS08305 (DMO12_04929) | - | 1731852..1732625 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| DMO12_RS08310 (DMO12_04932) | - | 1732663..1733271 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| DMO12_RS08315 (DMO12_04935) | - | 1733281..1733835 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| DMO12_RS08320 (DMO12_04938) | xcpV | 1733825..1734205 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| DMO12_RS08325 (DMO12_04941) | xcpW | 1734205..1734906 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| DMO12_RS08330 (DMO12_04944) | gspK | 1734906..1735865 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| DMO12_RS08335 (DMO12_04947) | - | 1736096..1736692 (+) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| DMO12_RS08340 (DMO12_04950) | ung | 1736743..1737456 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| DMO12_RS08345 (DMO12_04953) | - | 1737453..1738577 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| DMO12_RS08350 (DMO12_04956) | tadA | 1738584..1739087 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=306445 DMO12_RS08320 WP_000836911.1 1733825..1734205(+) (xcpV) [Acinetobacter baumannii ACICU]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=306445 DMO12_RS08320 WP_000836911.1 1733825..1734205(+) (xcpV) [Acinetobacter baumannii ACICU]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |