Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EW995_RS05780 Genome accession   NZ_CP035884
Coordinates   1207362..1208099 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain LSN03-016011/A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1202362..1213099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW995_RS05765 clpC 1202816..1205389 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  EW995_RS05770 yfiH 1205519..1206250 (-) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  EW995_RS05775 rluD 1206247..1207227 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EW995_RS05780 comL 1207362..1208099 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EW995_RS05785 - 1208203..1209549 (+) 1347 WP_000483767.1 IS4-like element IS4 family transposase -
  EW995_RS05790 raiA 1209810..1210151 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EW995_RS05795 pheL 1210255..1210302 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  EW995_RS05800 pheA 1210401..1211561 (+) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  EW995_RS05805 tyrA 1211604..1212725 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=306442 EW995_RS05780 WP_000197686.1 1207362..1208099(+) (comL) [Escherichia coli strain LSN03-016011/A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=306442 EW995_RS05780 WP_000197686.1 1207362..1208099(+) (comL) [Escherichia coli strain LSN03-016011/A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment