Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SDEG_RS00670 Genome accession   NC_012891
Coordinates   114352..114780 (+) Length   142 a.a.
NCBI ID   WP_041788719.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109352..119780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS00650 (SDEG_0133) - 111695..112060 (+) 366 WP_012766445.1 DUF1033 family protein -
  SDEG_RS00655 (SDEG_0134) comGA/cglA 112141..113082 (+) 942 WP_003062163.1 competence type IV pilus ATPase ComGA Machinery gene
  SDEG_RS00660 (SDEG_0135) comGB 113018..114049 (+) 1032 WP_015057201.1 competence type IV pilus assembly protein ComGB Machinery gene
  SDEG_RS00665 (SDEG_0136) comGC 114051..114377 (+) 327 WP_003055259.1 competence type IV pilus major pilin ComGC Machinery gene
  SDEG_RS00670 (SDEG_0137) comGD 114352..114780 (+) 429 WP_041788719.1 competence type IV pilus minor pilin ComGD Machinery gene
  SDEG_RS00675 (SDEG_0138) comGE 114788..115033 (+) 246 WP_003058569.1 competence type IV pilus minor pilin ComGE Machinery gene
  SDEG_RS00680 (SDEG_0139) comGF 115014..115454 (+) 441 WP_003061780.1 competence type IV pilus minor pilin ComGF Machinery gene
  SDEG_RS00685 (SDEG_0140) comGG 115483..115806 (+) 324 WP_227985720.1 competence type IV pilus minor pilin ComGG -
  SDEG_RS00690 (SDEG_0141) comGH 115869..116822 (+) 954 WP_003060701.1 class I SAM-dependent methyltransferase Machinery gene
  SDEG_RS00695 (SDEG_0142) - 116881..118077 (+) 1197 WP_012766450.1 acetate kinase -
  SDEG_RS00700 (SDEG_0143) - 118384..118590 (+) 207 WP_003058508.1 helix-turn-helix transcriptional regulator -
  SDEG_RS00705 (SDEG_0144) - 118693..119373 (+) 681 WP_012766451.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16428.92 Da        Isoelectric Point: 9.9660

>NTDB_id=30631 SDEG_RS00670 WP_041788719.1 114352..114780(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MRLKNCNLKAFTMLESLLTLSVTSFIVLGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQMLAA
EESLTIPDLIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=30631 SDEG_RS00670 WP_041788719.1 114352..114780(+) (comGD) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGAGACTCAAAAACTGCAACCTTAAAGCTTTCACAATGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGGGTTTTGACAATTTCTTCGAAACAAATGCTAGCGGCA
GAGGAGTCGTTAACAATACCTGACTTGATAAGGGTTAAGAATAGCCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

43.382

95.775

0.415
  comGD Streptococcus mutans UA140

44.961

90.845

0.408
  comGD Streptococcus mutans UA159

44.961

90.845

0.408
  comGD/cglD Streptococcus mitis NCTC 12261

38.971

95.775

0.373

Multiple sequence alignment