Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EW998_RS07540 Genome accession   NZ_CP035874
Coordinates   1559027..1559764 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain B2C     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1554027..1564764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW998_RS07510 yfiL 1554174..1554551 (-) 378 WP_000976005.1 DUF2799 domain-containing protein -
  EW998_RS07515 aroF 1554761..1555831 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EW998_RS07520 tyrA 1555842..1556963 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EW998_RS07525 pheA 1557006..1558166 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  EW998_RS07530 pheL 1558265..1558312 (-) 48 WP_010723158.1 phe operon leader peptide -
  EW998_RS07535 raiA 1558416..1558757 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EW998_RS07540 comL 1559027..1559764 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EW998_RS07545 rluD 1559899..1560879 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EW998_RS07550 yfiH 1560876..1561607 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  EW998_RS07555 clpC 1561737..1564310 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=306226 EW998_RS07540 WP_000197686.1 1559027..1559764(-) (comL) [Escherichia coli strain B2C]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=306226 EW998_RS07540 WP_000197686.1 1559027..1559764(-) (comL) [Escherichia coli strain B2C]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment