Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EW999_RS20055 Genome accession   NZ_CP035870
Coordinates   4089625..4090101 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain E2528-C1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4084625..4095101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW999_RS20020 kpsS 4086132..4087352 (+) 1221 WP_001735713.1 capsule biosynthesis protein Regulator
  EW999_RS20025 - 4087378..4087608 (-) 231 Protein_3946 hypothetical protein -
  EW999_RS20030 - 4087714..4087890 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  EW999_RS20035 - 4087907..4088277 (-) 371 Protein_3948 DUF5983 family protein -
  EW999_RS20040 - 4088340..4088714 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  EW999_RS20045 - 4088804..4089172 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EW999_RS20050 - 4089335..4089556 (-) 222 WP_001735710.1 DUF987 domain-containing protein -
  EW999_RS20055 radC 4089625..4090101 (-) 477 WP_001186725.1 DNA repair protein RadC Machinery gene
  EW999_RS20060 - 4090117..4090602 (-) 486 WP_001735709.1 antirestriction protein -
  EW999_RS20065 - 4090657..4091475 (-) 819 WP_074481115.1 DUF932 domain-containing protein -
  EW999_RS20070 - 4091593..4091788 (-) 196 Protein_3955 DUF905 family protein -
  EW999_RS20075 - 4091859..4094705 (-) 2847 WP_032200397.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=306172 EW999_RS20055 WP_001186725.1 4089625..4090101(-) (radC) [Escherichia coli strain E2528-C1]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=306172 EW999_RS20055 WP_001186725.1 4089625..4090101(-) (radC) [Escherichia coli strain E2528-C1]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGCCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCTTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399