Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   EW999_RS20020 Genome accession   NZ_CP035870
Coordinates   4086132..4087352 (+) Length   406 a.a.
NCBI ID   WP_001735713.1    Uniprot ID   -
Organism   Escherichia coli strain E2528-C1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4081132..4092352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW999_RS20005 rfbA 4081276..4082154 (+) 879 WP_000166786.1 glucose-1-phosphate thymidylyltransferase RfbA -
  EW999_RS20010 rfbC 4082220..4082771 (+) 552 WP_001100778.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  EW999_RS20015 - 4082821..4084968 (+) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  EW999_RS20020 kpsS 4086132..4087352 (+) 1221 WP_001735713.1 capsule biosynthesis protein Regulator
  EW999_RS20025 - 4087378..4087608 (-) 231 Protein_3946 hypothetical protein -
  EW999_RS20030 - 4087714..4087890 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  EW999_RS20035 - 4087907..4088277 (-) 371 Protein_3948 DUF5983 family protein -
  EW999_RS20040 - 4088340..4088714 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  EW999_RS20045 - 4088804..4089172 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EW999_RS20050 - 4089335..4089556 (-) 222 WP_001735710.1 DUF987 domain-containing protein -
  EW999_RS20055 radC 4089625..4090101 (-) 477 WP_001186725.1 DNA repair protein RadC Machinery gene
  EW999_RS20060 - 4090117..4090602 (-) 486 WP_001735709.1 antirestriction protein -
  EW999_RS20065 - 4090657..4091475 (-) 819 WP_074481115.1 DUF932 domain-containing protein -
  EW999_RS20070 - 4091593..4091788 (-) 196 Protein_3955 DUF905 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48421.92 Da        Isoelectric Point: 10.1710

>NTDB_id=306171 EW999_RS20020 WP_001735713.1 4086132..4087352(+) (kpsS) [Escherichia coli strain E2528-C1]
MKNNALSILLSGKKYLLLQGPMGPFFNDIAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSAM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=306171 EW999_RS20020 WP_001735713.1 4086132..4087352(+) (kpsS) [Escherichia coli strain E2528-C1]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTCTTCAA
TGATATTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGGCGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ACGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382