Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV160_RS13010 Genome accession   NZ_CP031336
Coordinates   289322..289786 (-) Length   154 a.a.
NCBI ID   WP_162818803.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21717     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 280595..296002 289322..289786 within 0


Gene organization within MGE regions


Location: 280595..296002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS01720 - 280595..281755 (-) 1161 WP_338067026.1 DUF6716 putative glycosyltransferase -
  DV160_RS01725 galE 281932..282951 (+) 1020 WP_024496837.1 UDP-glucose 4-epimerase GalE -
  DV160_RS01730 rffG 283067..284134 (+) 1068 WP_061370911.1 dTDP-glucose 4,6-dehydratase -
  DV160_RS01735 rfbA 284197..285063 (+) 867 WP_002224369.1 glucose-1-phosphate thymidylyltransferase RfbA -
  DV160_RS01740 rfbC 285117..285674 (+) 558 WP_002224368.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  DV160_RS01745 - 285718..287736 (-) 2019 WP_002224367.1 OPT family oligopeptide transporter -
  DV160_RS01750 dnaJ 287932..289053 (-) 1122 WP_002215274.1 molecular chaperone DnaJ -
  DV160_RS13010 comE 289322..289786 (-) 465 WP_162818803.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV160_RS01790 dksA 295586..296002 (-) 417 WP_002215267.1 RNA polymerase-binding protein DksA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16579.80 Da        Isoelectric Point: 10.8773

>NTDB_id=306096 DV160_RS13010 WP_162818803.1 289322..289786(-) (comE) [Neisseria meningitidis strain M21717]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGLAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=306096 DV160_RS13010 WP_162818803.1 289322..289786(-) (comE) [Neisseria meningitidis strain M21717]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCTTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCGGATAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment