Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV160_RS05600 Genome accession   NZ_CP031336
Coordinates   929414..929878 (+) Length   154 a.a.
NCBI ID   WP_162818812.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21717     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 924414..934878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS05600 comE 929414..929878 (+) 465 WP_162818812.1 ComEA family DNA-binding protein Machinery gene
  DV160_RS13760 - 929992..930429 (-) 438 Protein_901 HK97 family phage prohead protease -
  DV160_RS05610 - 930541..931134 (-) 594 WP_002220247.1 hypothetical protein -
  DV160_RS05615 prmB 931279..932178 (+) 900 WP_002236035.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  DV160_RS05625 - 932459..933196 (+) 738 WP_002220248.1 toxin-antitoxin system YwqK family antitoxin -
  DV160_RS05630 - 933322..933594 (+) 273 WP_002212673.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16577.79 Da        Isoelectric Point: 10.8773

>NTDB_id=306071 DV160_RS05600 WP_162818812.1 929414..929878(+) (comE) [Neisseria meningitidis strain M21717]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPALPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=306071 DV160_RS05600 WP_162818812.1 929414..929878(+) (comE) [Neisseria meningitidis strain M21717]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGCTCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment