Detailed information    

insolico Bioinformatically predicted

Overview


Name   dsbA1   Type   Machinery gene
Locus tag   DV178_RS05990 Genome accession   NZ_CP031335
Coordinates   1006253..1006951 (+) Length   232 a.a.
NCBI ID   WP_002221583.1    Uniprot ID   A1KRV7
Organism   Neisseria meningitidis strain M25964     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1001253..1011951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV178_RS05970 trpC 1002334..1003116 (-) 783 WP_002221587.1 indole-3-glycerol phosphate synthase TrpC -
  DV178_RS05975 - 1003167..1004123 (-) 957 WP_002221585.1 YheT family hydrolase -
  DV178_RS05980 murJ 1004256..1005794 (-) 1539 WP_002221584.1 murein biosynthesis integral membrane protein MurJ -
  DV178_RS14115 - 1005852..1005959 (+) 108 Protein_960 IS5/IS1182 family transposase -
  DV178_RS05990 dsbA1 1006253..1006951 (+) 699 WP_002221583.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV178_RS05995 amgK 1007008..1008012 (-) 1005 WP_002221582.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  DV178_RS06000 - 1008082..1010490 (+) 2409 WP_002247753.1 LPS-assembly protein LptD -
  DV178_RS06005 - 1010595..1011755 (+) 1161 WP_115432318.1 peptidylprolyl isomerase -

Sequence


Protein


Download         Length: 232 a.a.        Molecular weight: 25236.83 Da        Isoelectric Point: 5.3490

>NTDB_id=306025 DV178_RS05990 WP_002221583.1 1006253..1006951(+) (dsbA1) [Neisseria meningitidis strain M25964]
MKSKHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=306025 DV178_RS05990 WP_002221583.1 1006253..1006951(+) (dsbA1) [Neisseria meningitidis strain M25964]
ATGAAATCCAAACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCACTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACTGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTCGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTTCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains


Predicted by InterproScan.

(63-212)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A1KRV7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.138

100

0.991

  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621


Multiple sequence alignment