Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV166_RS09585 Genome accession   NZ_CP031334
Coordinates   1622384..1622977 (+) Length   197 a.a.
NCBI ID   WP_115437100.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22293     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1617384..1627977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV166_RS09555 - 1617640..1618227 (-) 588 WP_002242525.1 superoxide dismutase -
  DV166_RS09565 dnaB 1618390..1619796 (+) 1407 WP_002213843.1 replicative DNA helicase -
  DV166_RS09570 pilH 1620098..1620766 (+) 669 WP_115437098.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV166_RS09575 pilV 1620796..1621410 (+) 615 WP_115437231.1 type IV pilus modification protein PilV Machinery gene
  DV166_RS09580 pilJ 1621407..1622405 (+) 999 WP_115437099.1 PilW family protein Machinery gene
  DV166_RS09585 pilK 1622384..1622977 (+) 594 WP_115437100.1 pilus assembly protein Machinery gene
  DV166_RS09590 pilX 1622982..1623455 (+) 474 WP_205254915.1 PilX family type IV pilin Machinery gene
  DV166_RS09610 - 1626308..1626733 (-) 426 Protein_1547 AzlC family ABC transporter permease -
  DV166_RS09615 dut 1626881..1627333 (+) 453 WP_057288628.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21675.63 Da        Isoelectric Point: 7.5811

>NTDB_id=305992 DV166_RS09585 WP_115437100.1 1622384..1622977(+) (pilK) [Neisseria meningitidis strain M22293]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTAKSTGLCIDNKGMEYKKGTRSVSKMPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=305992 DV166_RS09585 WP_115437100.1 1622384..1622977(+) (pilK) [Neisseria meningitidis strain M22293]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAAATCTACAG
GCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAAATGCCACGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

87.624

100

0.898

Multiple sequence alignment