Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DV166_RS09570 Genome accession   NZ_CP031334
Coordinates   1620098..1620766 (+) Length   222 a.a.
NCBI ID   WP_115437098.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22293     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1615098..1625766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV166_RS09545 - 1616320..1617285 (-) 966 WP_002217985.1 IS30-like element IS1655 family transposase -
  DV166_RS09555 - 1617640..1618227 (-) 588 WP_002242525.1 superoxide dismutase -
  DV166_RS09565 dnaB 1618390..1619796 (+) 1407 WP_002213843.1 replicative DNA helicase -
  DV166_RS09570 pilH 1620098..1620766 (+) 669 WP_115437098.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV166_RS09575 pilV 1620796..1621410 (+) 615 WP_115437231.1 type IV pilus modification protein PilV Machinery gene
  DV166_RS09580 pilJ 1621407..1622405 (+) 999 WP_115437099.1 PilW family protein Machinery gene
  DV166_RS09585 pilK 1622384..1622977 (+) 594 WP_115437100.1 pilus assembly protein Machinery gene
  DV166_RS09590 pilX 1622982..1623455 (+) 474 WP_205254915.1 PilX family type IV pilin Machinery gene

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24722.30 Da        Isoelectric Point: 9.8846

>NTDB_id=305989 DV166_RS09570 WP_115437098.1 1620098..1620766(+) (pilH) [Neisseria meningitidis strain M22293]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDSGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYTK
DQHLTSKSSFFYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=305989 DV166_RS09570 WP_115437098.1 1620098..1620766(+) (pilH) [Neisseria meningitidis strain M22293]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGAGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAGCAAATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.52

99.55

0.851

Multiple sequence alignment