Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   DV166_RS05740 Genome accession   NZ_CP031334
Coordinates   968885..969583 (+) Length   232 a.a.
NCBI ID   WP_076612544.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22293     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 963885..974583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV166_RS05720 trpC 964968..965750 (-) 783 WP_115437004.1 indole-3-glycerol phosphate synthase TrpC -
  DV166_RS05725 - 965801..966757 (-) 957 WP_115437005.1 YheT family hydrolase -
  DV166_RS05730 murJ 966890..968428 (-) 1539 WP_115437006.1 murein biosynthesis integral membrane protein MurJ -
  DV166_RS05740 dsbA1 968885..969583 (+) 699 WP_076612544.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV166_RS05745 amgK 969640..970644 (-) 1005 WP_115437007.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  DV166_RS05750 - 970714..973122 (+) 2409 WP_002254130.1 LPS-assembly protein LptD -
  DV166_RS05755 - 973227..974279 (+) 1053 WP_021438451.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25255.83 Da        Isoelectric Point: 5.1392

>NTDB_id=305973 DV166_RS05740 WP_076612544.1 968885..969583(+) (dsbA1) [Neisseria meningitidis strain M22293]
MKSRQLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQEPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=305973 DV166_RS05740 WP_076612544.1 968885..969583(+) (dsbA1) [Neisseria meningitidis strain M22293]
ATGAAATCCAGACAACTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACTGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTCGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAGAGCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.138

100

0.991
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment