Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV143_RS13675 Genome accession   NZ_CP031333
Coordinates   1189427..1189891 (-) Length   154 a.a.
NCBI ID   WP_162467424.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18727     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1188034..1188702 1189427..1189891 flank 725


Gene organization within MGE regions


Location: 1188034..1189891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS07075 - 1188034..1188686 (-) 653 Protein_1152 IS1595 family transposase -
  DV143_RS14060 - 1189284..1189493 (+) 210 Protein_1153 peptidase -
  DV143_RS13675 comE 1189427..1189891 (-) 465 WP_162467424.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16557.90 Da        Isoelectric Point: 10.9585

>NTDB_id=305953 DV143_RS13675 WP_162467424.1 1189427..1189891(-) (comE) [Neisseria meningitidis strain M18727]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305953 DV143_RS13675 WP_162467424.1 1189427..1189891(-) (comE) [Neisseria meningitidis strain M18727]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCGGTGCTGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753

Multiple sequence alignment