Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV143_RS13650 Genome accession   NZ_CP031333
Coordinates   872554..873018 (-) Length   154 a.a.
NCBI ID   WP_162467424.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18727     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 867554..878018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS05160 - 868838..869110 (-) 273 WP_002212673.1 ACT domain-containing protein -
  DV143_RS05165 - 869236..869973 (-) 738 WP_002220248.1 toxin-antitoxin system YwqK family antitoxin -
  DV143_RS05175 prmB 870254..871153 (-) 900 WP_002239218.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  DV143_RS05180 - 871298..871891 (+) 594 WP_002222152.1 hypothetical protein -
  DV143_RS14305 - 872033..872359 (+) 327 Protein_849 Caudovirus prohead protease -
  DV143_RS13650 comE 872554..873018 (-) 465 WP_162467424.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16557.90 Da        Isoelectric Point: 10.9585

>NTDB_id=305952 DV143_RS13650 WP_162467424.1 872554..873018(-) (comE) [Neisseria meningitidis strain M18727]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305952 DV143_RS13650 WP_162467424.1 872554..873018(-) (comE) [Neisseria meningitidis strain M18727]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGGCCCAGCTAAACCGGTGCTGCCCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753
  comE Neisseria gonorrhoeae MS11

95.082

79.221

0.753

Multiple sequence alignment