Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXE31_RS19415 Genome accession   NZ_CP035855
Coordinates   3999842..4000378 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli TW11681     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3994842..4005378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE31_RS19395 aphA 3995130..3995843 (+) 714 WP_001226928.1 acid phosphatase AphA -
  EXE31_RS19400 yjbQ 3995954..3996370 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  EXE31_RS19405 yjbR 3996374..3996730 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  EXE31_RS19410 uvrA 3996765..3999587 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  EXE31_RS19415 ssb 3999842..4000378 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  EXE31_RS19420 yjcB 4000477..4000758 (-) 282 WP_001295689.1 YjcB family protein -
  EXE31_RS19425 pdeC 4001188..4002774 (+) 1587 WP_000019544.1 c-di-GMP phosphodiesterase PdeC -
  EXE31_RS19430 soxS 4002777..4003100 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  EXE31_RS19435 soxR 4003186..4003650 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=305927 EXE31_RS19415 WP_000168305.1 3999842..4000378(+) (ssb) [Escherichia coli TW11681]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=305927 EXE31_RS19415 WP_000168305.1 3999842..4000378(+) (ssb) [Escherichia coli TW11681]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment