Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DV179_RS14670 Genome accession   NZ_CP031331
Coordinates   1825199..1825321 (+) Length   40 a.a.
NCBI ID   WP_306808222.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26263     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1820199..1830321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV179_RS10895 - 1820349..1820669 (-) 321 WP_002216895.1 DUF1132 family protein -
  DV179_RS10900 - 1820788..1821087 (-) 300 WP_024464993.1 hypothetical protein -
  DV179_RS10905 - 1821115..1821345 (-) 231 WP_002223585.1 hypothetical protein -
  DV179_RS10910 - 1821583..1821783 (-) 201 WP_002218476.1 hypothetical protein -
  DV179_RS10915 - 1821787..1822098 (-) 312 WP_002218477.1 hypothetical protein -
  DV179_RS10920 - 1822110..1823324 (-) 1215 WP_002220395.1 replication initiation factor domain-containing protein -
  DV179_RS10935 - 1824474..1824758 (+) 285 WP_002216166.1 GIY-YIG nuclease family protein -
  DV179_RS14670 pilC 1825199..1825321 (+) 123 WP_306808222.1 hypothetical protein Machinery gene
  DV179_RS10940 pilC 1825300..1828338 (+) 3039 WP_322114703.1 PilC family type IV pilus tip adhesin Machinery gene

Sequence

Protein


Download         Length: 40 a.a.        Molecular weight: 4630.48 Da        Isoelectric Point: 12.3552

>NTDB_id=305907 DV179_RS14670 WP_306808222.1 1825199..1825321(+) (pilC) [Neisseria meningitidis strain M26263]
MNKTWKRQVFRHTALYTAILMFSHTGGGGGRRRKCIHTVL

Nucleotide


Download         Length: 123 bp        

>NTDB_id=305907 DV179_RS14670 WP_306808222.1 1825199..1825321(+) (pilC) [Neisseria meningitidis strain M26263]
ATGAATAAAACTTGGAAACGGCAGGTTTTCCGCCATACCGCGCTTTATACCGCCATATTGATGTTTTCCCATACCGGCGG
GGGGGGGGGGCGCAGGCGCAAATGTATTCATACAGTATTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

90

75

0.675

Multiple sequence alignment