Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV179_RS08990 Genome accession   NZ_CP031331
Coordinates   1501784..1502248 (-) Length   154 a.a.
NCBI ID   WP_162818804.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26263     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1496784..1507248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV179_RS08935 - 1496802..1497047 (-) 246 WP_002224299.1 hypothetical protein -
  DV179_RS08945 - 1497159..1497587 (+) 429 WP_002212270.1 CopD family protein -
  DV179_RS08950 - 1497599..1498075 (+) 477 WP_002224298.1 CYTH domain-containing protein -
  DV179_RS08955 - 1498425..1498913 (-) 489 WP_002224297.1 dihydrofolate reductase -
  DV179_RS08960 aroG 1498981..1500036 (-) 1056 WP_002216371.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  DV179_RS13775 - 1500198..1500425 (-) 228 WP_153310284.1 hypothetical protein -
  DV179_RS08970 - 1500699..1500956 (+) 258 WP_002247771.1 hypothetical protein -
  DV179_RS14135 - 1501005..1501109 (-) 105 Protein_1475 IS1595 family transposase -
  DV179_RS14405 - 1501710..1501850 (+) 141 Protein_1476 peptidase -
  DV179_RS08990 comE 1501784..1502248 (-) 465 WP_162818804.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16533.78 Da        Isoelectric Point: 10.9695

>NTDB_id=305887 DV179_RS08990 WP_162818804.1 1501784..1502248(-) (comE) [Neisseria meningitidis strain M26263]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305887 DV179_RS08990 WP_162818804.1 1501784..1502248(-) (comE) [Neisseria meningitidis strain M26263]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment