Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV179_RS08990 Genome accession   NZ_CP031331
Coordinates   1501784..1502248 (-) Length   154 a.a.
NCBI ID   WP_162818804.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M26263     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1501213..1512299 1501784..1502248 within 0


Gene organization within MGE regions


Location: 1501213..1512299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV179_RS14405 - 1501710..1501850 (+) 141 Protein_1476 peptidase -
  DV179_RS08990 comE 1501784..1502248 (-) 465 WP_162818804.1 ComEA family DNA-binding protein Machinery gene
  DV179_RS09030 - 1508047..1508853 (-) 807 WP_002221447.1 inner membrane protein YpjD -
  DV179_RS09035 ffh 1509073..1510443 (+) 1371 WP_002221448.1 signal recognition particle protein -
  DV179_RS09040 dsbA2 1510774..1511469 (-) 696 WP_002215704.1 DsbA family protein Machinery gene
  DV179_RS09045 - 1511640..1512299 (-) 660 WP_002218694.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16533.78 Da        Isoelectric Point: 10.9695

>NTDB_id=305887 DV179_RS08990 WP_162818804.1 1501784..1502248(-) (comE) [Neisseria meningitidis strain M26263]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305887 DV179_RS08990 WP_162818804.1 1501784..1502248(-) (comE) [Neisseria meningitidis strain M26263]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment