Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EXE31_RS11285 Genome accession   NZ_CP035855
Coordinates   2328097..2328834 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli TW11681     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2323097..2333834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE31_RS11270 clpC 2323551..2326124 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  EXE31_RS11275 yfiH 2326254..2326985 (-) 732 WP_000040112.1 purine nucleoside phosphorylase YfiH -
  EXE31_RS11280 rluD 2326982..2327962 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EXE31_RS11285 comL 2328097..2328834 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EXE31_RS11290 raiA 2329105..2329446 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EXE31_RS11295 pheL 2329550..2329597 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EXE31_RS11300 pheA 2329696..2330856 (+) 1161 WP_000200139.1 bifunctional chorismate mutase/prephenate dehydratase -
  EXE31_RS11305 tyrA 2330899..2332020 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EXE31_RS11310 aroF 2332031..2333101 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EXE31_RS11315 yfiL 2333311..2333676 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=305884 EXE31_RS11285 WP_000197686.1 2328097..2328834(+) (comL) [Escherichia coli TW11681]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=305884 EXE31_RS11285 WP_000197686.1 2328097..2328834(+) (comL) [Escherichia coli TW11681]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment