Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   EXE31_RS07805 Genome accession   NZ_CP035855
Coordinates   1562588..1563244 (-) Length   218 a.a.
NCBI ID   WP_000611338.1    Uniprot ID   -
Organism   Escherichia coli TW11681     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1557588..1568244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE31_RS07775 yecA 1558839..1559504 (-) 666 WP_000847902.1 UPF0149 family protein YecA -
  EXE31_RS07795 pgsA 1560154..1560702 (-) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EXE31_RS07800 uvrC 1560759..1562591 (-) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  EXE31_RS07805 letA 1562588..1563244 (-) 657 WP_000611338.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  EXE31_RS07810 yecU 1563540..1563716 (+) 177 WP_001307856.1 protein YecU -
  EXE31_RS07815 yecF 1563703..1563927 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  EXE31_RS07820 sdiA 1563994..1564716 (-) 723 WP_001154267.1 transcriptional regulator SdiA -
  EXE31_RS07825 tcyN 1564946..1565698 (-) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  EXE31_RS07830 tcyL 1565695..1566363 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  EXE31_RS07835 dcyD 1566378..1567364 (-) 987 WP_001128215.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23908.65 Da        Isoelectric Point: 6.9614

>NTDB_id=305871 EXE31_RS07805 WP_000611338.1 1562588..1563244(-) (letA) [Escherichia coli TW11681]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNSVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=305871 EXE31_RS07805 WP_000611338.1 1562588..1563244(-) (letA) [Escherichia coli TW11681]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATTCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGCCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.691

94.954

0.491
  letA Legionella pneumophila strain ERS1305867

51.691

94.954

0.491