Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV163_RS13555 Genome accession   NZ_CP031330
Coordinates   2069098..2069562 (+) Length   154 a.a.
NCBI ID   WP_162467382.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21955     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064098..2074562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS13555 comE 2069098..2069562 (+) 465 WP_162467382.1 ComEA family DNA-binding protein Machinery gene
  DV163_RS14085 - 2069676..2070113 (-) 438 Protein_1991 HK97 family phage prohead protease -
  DV163_RS12135 - 2070225..2070818 (-) 594 WP_002218492.1 hypothetical protein -
  DV163_RS12140 prmB 2070963..2071862 (+) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  DV163_RS12150 - 2072143..2072880 (+) 738 WP_002223538.1 toxin-antitoxin system YwqK family antitoxin -
  DV163_RS12155 - 2073006..2073278 (+) 273 WP_002218494.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16587.88 Da        Isoelectric Point: 10.8645

>NTDB_id=305858 DV163_RS13555 WP_162467382.1 2069098..2069562(+) (comE) [Neisseria meningitidis strain M21955]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305858 DV163_RS13555 WP_162467382.1 2069098..2069562(+) (comE) [Neisseria meningitidis strain M21955]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGACCAGG
CTTCGGTCGGCGCGCCCGCACCAAAAGCCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment