Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   DV163_RS06550 Genome accession   NZ_CP031330
Coordinates   1110179..1110823 (-) Length   214 a.a.
NCBI ID   WP_002224916.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21955     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1105179..1115823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS06515 ftsL 1105564..1105827 (-) 264 WP_002220363.1 cell division protein FtsL -
  DV163_RS06520 rsmH 1105824..1106810 (-) 987 WP_002224919.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  DV163_RS06525 mraZ 1106807..1107262 (-) 456 WP_002224918.1 division/cell wall cluster transcriptional repressor MraZ -
  DV163_RS06530 - 1107541..1108752 (+) 1212 WP_010980791.1 class I SAM-dependent methyltransferase -
  DV163_RS06545 - 1109325..1110146 (-) 822 WP_002222025.1 undecaprenyl-diphosphate phosphatase -
  DV163_RS06550 dsbA1 1110179..1110823 (-) 645 WP_002224916.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  DV163_RS06555 ftsN 1110826..1111689 (-) 864 WP_002243994.1 cell division protein FtsN -
  DV163_RS06560 comM 1111795..1113291 (-) 1497 WP_002224914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DV163_RS06565 - 1113305..1113625 (-) 321 WP_002212476.1 accessory factor UbiK family protein -
  DV163_RS06575 putP 1114108..1115634 (+) 1527 WP_002224913.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23983.98 Da        Isoelectric Point: 9.8294

>NTDB_id=305833 DV163_RS06550 WP_002224916.1 1110179..1110823(-) (dsbA1) [Neisseria meningitidis strain M21955]
MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=305833 DV163_RS06550 WP_002224916.1 1110179..1110823(-) (dsbA1) [Neisseria meningitidis strain M21955]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGTAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTTTGGCTAGGATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGTCGGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACCGCATCGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

51.613

86.916

0.449

Multiple sequence alignment