Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DV163_RS03635 Genome accession   NZ_CP031330
Coordinates   611139..611807 (-) Length   222 a.a.
NCBI ID   WP_002230433.1    Uniprot ID   Q9JZV4
Organism   Neisseria meningitidis strain M21955     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 606139..616807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS03600 - 606370..606735 (+) 366 Protein_593 AzlC family ABC transporter permease -
  DV163_RS03615 pilX 608507..608980 (-) 474 WP_002225356.1 PilX family type IV pilin Machinery gene
  DV163_RS03620 pilK 608985..609578 (-) 594 WP_002244085.1 pilus assembly protein Machinery gene
  DV163_RS03625 pilJ 609557..610498 (-) 942 WP_002244084.1 PilW family protein Machinery gene
  DV163_RS03630 pilV 610495..611115 (-) 621 WP_002225360.1 type IV pilus modification protein PilV Machinery gene
  DV163_RS03635 pilH 611139..611807 (-) 669 WP_002230433.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV163_RS03645 dnaB 612116..613522 (-) 1407 WP_002225362.1 replicative DNA helicase -
  DV163_RS03655 - 613686..614273 (+) 588 WP_002220670.1 superoxide dismutase -
  DV163_RS03665 - 614790..615299 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DV163_RS03670 - 615631..615963 (-) 333 WP_002225363.1 hypothetical protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24955.58 Da        Isoelectric Point: 9.7285

>NTDB_id=305824 DV163_RS03635 WP_002230433.1 611139..611807(-) (pilH) [Neisseria meningitidis strain M21955]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTEDVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTTDRVVWTFNQNGTFGYTK
DQHLTKQSSFFYSDGYIQIVLTDAKAVSADEKKFRSAVVLINSSGRVEVCPRGDRRTMCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=305824 DV163_RS03635 WP_002230433.1 611139..611807(-) (pilH) [Neisseria meningitidis strain M21955]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGAGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCACCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTACAAAACAATCCAGCTTTTTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGCCGATGAAAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGGGGTG
ATCGGCGTACTATGTGCCAGTATAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

81.9

99.55

0.815

Multiple sequence alignment