Detailed information NTG0305822

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EXE32_RS11320
• Genome accession: NZ_CP035850
• Coordinates: 2374665..2375657 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain TW10590
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2369665..2380657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EXE32_RS11290	ispD	2369726..2370436 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EXE32_RS11295	ispF	2370436..2370915 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EXE32_RS11300	truD	2370912..2371961 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EXE32_RS11305	surE	2371942..2372703 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EXE32_RS11310	pcm	2372697..2373323 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EXE32_RS11315	nlpD	2373508..2374602 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EXE32_RS11320	rpoS	2374665..2375657 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EXE32_RS11325	-	2375778..2376185 (-)	408	WP_001208089.1	MarR family winged helix-turn-helix transcriptional regulator	-
EXE32_RS11330	-	2376332..2376925 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EXE32_RS11335	-	2376925..2378351 (+)	1427	Protein_2215	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EXE32_RS11340	-	2378362..2378598 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EXE32_RS11345	ygbN	2378637..2380001 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=305822 EXE32_RS11320 WP_000081550.1 2374665..2375657(+) (rpoS) [Escherichia coli strain TW10590]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=305822 EXE32_RS11320 WP_000081550.1 2374665..2375657(+) (rpoS) [Escherichia coli strain TW10590]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715