Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DV167_RS12605 Genome accession   NZ_CP031329
Coordinates   2142502..2143101 (-) Length   199 a.a.
NCBI ID   WP_002214520.1    Uniprot ID   Q4W563
Organism   Neisseria meningitidis strain M22425     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2137502..2148101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS12590 pilQ 2138963..2141272 (-) 2310 WP_002221480.1 type IV pilus secretin PilQ Machinery gene
  DV167_RS12595 pilP 2141291..2141836 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  DV167_RS12600 - 2141854..2142501 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  DV167_RS12605 pilN 2142502..2143101 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  DV167_RS12610 - 2143104..2144219 (-) 1116 WP_002251515.1 type IV pilus biogenesis protein PilM -
  DV167_RS12615 - 2144371..2146767 (+) 2397 WP_002251514.1 penicillin-binding protein 1A -
  DV167_RS12620 yihA 2146888..2147517 (-) 630 WP_002251513.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22257.48 Da        Isoelectric Point: 9.5493

>NTDB_id=305810 DV167_RS12605 WP_002214520.1 2142502..2143101(-) (pilN) [Neisseria meningitidis strain M22425]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINNQSERNTLLETSIAHLDTELSEIQKLKQE
KDAFLIKKNKIEELQLKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=305810 DV167_RS12605 WP_002214520.1 2142502..2143101(-) (pilN) [Neisseria meningitidis strain M22425]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAGCGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGTGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAACCAGT
CGGAAAGAAACACGCTGCTGGAAACCTCCATCGCACACTTGGATACCGAGCTGTCGGAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGAGGAGCTCCAGCTCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTGACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCCATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

100

100

1

Multiple sequence alignment