Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   DV167_RS12595 Genome accession   NZ_CP031329
Coordinates   2141291..2141836 (-) Length   181 a.a.
NCBI ID   WP_002214522.1    Uniprot ID   Q7DD77
Organism   Neisseria meningitidis strain M22425     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2136291..2146836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS12570 - 2137273..2137785 (-) 513 WP_002222978.1 shikimate kinase -
  DV167_RS12590 pilQ 2138963..2141272 (-) 2310 WP_002221480.1 type IV pilus secretin PilQ Machinery gene
  DV167_RS12595 pilP 2141291..2141836 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  DV167_RS12600 - 2141854..2142501 (-) 648 WP_002217908.1 type 4a pilus biogenesis protein PilO -
  DV167_RS12605 pilN 2142502..2143101 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  DV167_RS12610 - 2143104..2144219 (-) 1116 WP_002251515.1 type IV pilus biogenesis protein PilM -
  DV167_RS12615 - 2144371..2146767 (+) 2397 WP_002251514.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20067.55 Da        Isoelectric Point: 4.6512

>NTDB_id=305809 DV167_RS12595 WP_002214522.1 2141291..2141836(-) (pilP) [Neisseria meningitidis strain M22425]
MKHYALLISFLALSACSQGSEDLNEWMAQTRREAKAEIIPFQAPTLPVAPVYSPPQLTGPNAFDFRRMETDKKGENAPDT
KRIKETLEKFSLENMRYVGILKSGQKVSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNELIEDSTGNWVSRKAE
LLLNSSDKNTEQAAAPAAEQN

Nucleotide


Download         Length: 546 bp        

>NTDB_id=305809 DV167_RS12595 WP_002214522.1 2141291..2141836(-) (pilP) [Neisseria meningitidis strain M22425]
ATGAAACACTATGCCTTACTCATCAGCTTTCTGGCTCTCTCCGCGTGTTCCCAAGGTTCTGAGGACCTAAACGAATGGAT
GGCACAAACGCGACGCGAAGCCAAAGCAGAAATCATACCTTTCCAAGCACCTACCCTGCCGGTTGCGCCGGTATACAGCC
CGCCGCAGCTTACAGGGCCGAACGCATTCGACTTCCGCCGCATGGAAACCGACAAAAAAGGGGAAAATGCCCCCGACACC
AAGCGTATTAAAGAAACGCTGGAAAAATTCAGTTTGGAAAATATGCGTTATGTCGGCATTTTGAAGTCTGGACAGAAAGT
CTCCGGCTTCATCGAGGCTGAAGGTTATGTCTACACTGTCGGTGTCGGCAACTATTTGGGACAAAACTACGGTAGAATCG
AAAGCATTACCGACGACAGCATCGTCCTGAACGAGCTGATAGAAGACAGCACGGGCAACTGGGTTTCCCGTAAAGCAGAA
CTGCTGTTGAATTCTTCCGACAAAAACACCGAACAAGCGGCAGCACCTGCCGCAGAACAAAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2IVW
  PDB 4AV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

100

100

1

Multiple sequence alignment