Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV167_RS11240 Genome accession   NZ_CP031329
Coordinates   1901756..1902220 (+) Length   154 a.a.
NCBI ID   WP_162818945.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1896756..1907220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS11240 comE 1901756..1902220 (+) 465 WP_162818945.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV167_RS11245 comP 1902308..1902757 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  DV167_RS14040 - 1902918..1903241 (-) 324 WP_226893047.1 5'-nucleotidase -
  DV167_RS13785 - 1903371..1903523 (-) 153 WP_002223150.1 hypothetical protein -
  DV167_RS11265 - 1903880..1904524 (+) 645 WP_002223148.1 hypothetical protein -
  DV167_RS11270 - 1904540..1905631 (+) 1092 WP_002223147.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16459.71 Da        Isoelectric Point: 10.9585

>NTDB_id=305803 DV167_RS11240 WP_162818945.1 1901756..1902220(+) (comE) [Neisseria meningitidis strain M22425]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305803 DV167_RS11240 WP_162818945.1 1901756..1902220(+) (comE) [Neisseria meningitidis strain M22425]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACCCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCC
GCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCGGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment